List of clones in pair P018042.

cloneseq.5'-sequence3'-sequence
lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001L17Sequence477003106 (44)dbj|BAG55005.1|4e-31auxin-responsive Aux/IAA gene family member [Ipomoea nil]732003106 (44)gb|KJB11141.1|3e-81hypothetical protein B456_001G242900 [Gossypium raimondii] gb|KJB11144.1| hypoth
JMFF004M24Sequence569003106 (44)dbj|BAG55005.1|5e-28auxin-responsive Aux/IAA gene family member [Ipomoea nil]717003106 (44)gb|AFK36086.1|1e-71unknown [Lotus japonicus]
JMFF011C21Sequence532003106 (44)dbj|BAG55005.1|1e-14auxin-responsive Aux/IAA gene family member [Ipomoea nil]718003106 (44)gb|ABI36487.1|1e-70AUX/IAA7 A [Malus domestica] gb|ABI36488.1| AUX/IAA7 B [Malus domestica]
JMFF011G19Sequence388003106 (44)386003106 (44)gb|ABR25977.1|5e-16osiaa30-auxin-responsive aux/iaa gene family member [Oryza sativa Indica Group]
JMFF013D16Sequence542003106 (44)dbj|BAG55005.1|1e-30auxin-responsive Aux/IAA gene family member [Ipomoea nil]720003106 (44)gb|AFK36086.1|9e-89unknown [Lotus japonicus]
JMFF016G11Sequence587003106 (44)dbj|BAG55005.1|4e-40auxin-responsive Aux/IAA gene family member [Ipomoea nil]786003106 (44)gb|KJB11141.1|1e-85hypothetical protein B456_001G242900 [Gossypium raimondii] gb|KJB11144.1| hypoth
JMFF021H23Sequence548003106 (44)dbj|BAG55005.1|4e-20auxin-responsive Aux/IAA gene family member [Ipomoea nil]712003106 (44)gb|KJB11141.1|2e-85hypothetical protein B456_001G242900 [Gossypium raimondii] gb|KJB11144.1| hypoth
JMFF021I11Sequence589003106 (44)dbj|BAG55005.1|1e-37auxin-responsive Aux/IAA gene family member [Ipomoea nil]699003106 (44)gb|AFK36086.1|6e-71unknown [Lotus japonicus]
JMFF025J10Sequence696003106 (44)gb|AFK36086.1|2e-61unknown [Lotus japonicus]
JMFF026H15Sequence569003106 (44)dbj|BAG55005.1|1e-25auxin-responsive Aux/IAA gene family member [Ipomoea nil]764003106 (44)gb|AFK36086.1|3e-71unknown [Lotus japonicus]
JMFF030P12Sequence519003106 (44)dbj|BAG55005.1|1e-14auxin-responsive Aux/IAA gene family member [Ipomoea nil]674003106 (44)gb|AFK36086.1|9e-59unknown [Lotus japonicus]
JMFF032F08Sequence567003106 (44)dbj|BAG55005.1|7e-30auxin-responsive Aux/IAA gene family member [Ipomoea nil]751003106 (44)gb|AFK36086.1|1e-69unknown [Lotus japonicus]
JMFF032I05Sequence578003106 (44)gb|KJB38279.1|2e-34hypothetical protein B456_006G246000 [Gossypium raimondii]700003106 (44)gb|ABI36487.1|1e-71AUX/IAA7 A [Malus domestica] gb|ABI36488.1| AUX/IAA7 B [Malus domestica]
JMFF033K08Sequence447003106 (44)dbj|BAG55005.1|5e-14auxin-responsive Aux/IAA gene family member [Ipomoea nil]720003106 (44)gb|AFK36086.1|2e-71unknown [Lotus japonicus]
JMFF034M10Sequence522003106 (44)dbj|BAG55005.1|1e-14auxin-responsive Aux/IAA gene family member [Ipomoea nil]717003106 (44)gb|AFK36086.1|1e-62unknown [Lotus japonicus]
JMFF035E14Sequence561003106 (44)dbj|BAG55005.1|1e-20auxin-responsive Aux/IAA gene family member [Ipomoea nil]717003106 (44)gb|ABI36487.1|2e-71AUX/IAA7 A [Malus domestica] gb|ABI36488.1| AUX/IAA7 B [Malus domestica]
JMFF038C13Sequence580003106 (44)gb|KJB38279.1|1e-34hypothetical protein B456_006G246000 [Gossypium raimondii]630003106 (44)gb|AFK36086.1|2e-46unknown [Lotus japonicus]
JMFF039C13Sequence750003106 (44)gb|ABI36487.1|1e-70AUX/IAA7 A [Malus domestica] gb|ABI36488.1| AUX/IAA7 B [Malus domestica]
JMFF045H19Sequence640003106 (44)dbj|BAG55005.1|1e-66auxin-responsive Aux/IAA gene family member [Ipomoea nil]581003106 (44)gb|AFK36086.1|7e-52unknown [Lotus japonicus]
JMFF050L13Sequence593003106 (44)dbj|BAG55005.1|3e-53auxin-responsive Aux/IAA gene family member [Ipomoea nil]441003106 (44)gb|ABR25699.1|9e-25osiaa30-auxin-responsive aux/iaa gene family member, expressed [Oryza sativa In
JMFF050O10Sequence612003106 (44)dbj|BAG55005.1|2e-38auxin-responsive Aux/IAA gene family member [Ipomoea nil]654003106 (44)gb|AFK36086.1|3e-43unknown [Lotus japonicus]
JMFN004K20Sequence616003106 (44)dbj|BAG55005.1|1e-91auxin-responsive Aux/IAA gene family member [Ipomoea nil]
JMFN013B06Sequence635003106 (44)gb|AFK36086.1|4e-57unknown [Lotus japonicus]
JMFN046D02Sequence453003106 (44)gb|AFK36086.1|6e-41unknown [Lotus japonicus]
JMFS165H07Sequence602003106 (44)gb|KJB38279.1|4e-36hypothetical protein B456_006G246000 [Gossypium raimondii]

Contig 3106 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.

SCORE============================================Contig003106============================================1270         
  38    ----------------------------------------------->JMFF050O10                                                    
                                                      <---------------------------------------------------rJMFF050O10  
  40  -------------------------------------------->JMFF026H15                                                         
                                           <-----------------------------------------------------------rJMFF026H15  
  44  ---------------------------------------->JMFF030P12                                                             
                                                  <---------------------------------------------------rJMFF030P12  
  53 ----------------------------------------->JMFF011C21                                                             
                                            <--------------------------------------------------------rJMFF011C21  
  53 ------------------------------------------->JMFF035E14                                                           
                                            <-------------------------------------------------------rJMFF035E14  
  66    -------------------------------------------->JMFF032F08                                                       
                                            <----------------------------------------------------------rJMFF032F08  
  66  ---------------------------------------->JMFF034M10                                                             
                                            <--------------------------------------------------------rJMFF034M10  
  87      --------------------------------------------->JMFF038C13                                                    
                                                      <------------------------------------------------rJMFF038C13  
  97    -------------------------------------------->JMFF004M24                                                       
                                            <-------------------------------------------------------rJMFF004M24  
 110      ---------------------------------->JMFF033K08                                                               
                                            <--------------------------------------------------------rJMFF033K08  
 145      --------------------------------------------->JMFF021I11                                                    
                                           <------------------------------------------------------rJMFF021I11  
 145      --------------------------------------------->JMFF032I05                                                    
                                           <------------------------------------------------------rJMFF032I05  
 145   ------------------------------>JMFF011G19                                                                      
                                                                 <-----------------------------rJMFF011G19  
 158       --------------------------------------------->JMFF016G11                                                   
                                     <------------------------------------------------------------rJMFF016G11  
 165  ------------------------------------------>JMFF021H23                                                           
                                     <-------------------------------------------------------rJMFF021H23  
 248            ------------------------------------->JMFF001L17                                                      
                                       <---------------------------------------------------------rJMFF001L17  
 259       ------------------------------------------>JMFF013D16                                                      
                                  <--------------------------------------------------------rJMFF013D16  
 275            ---------------------------------------------->JMFF050L13                                             
                                                               <------------------------------rJMFF050L13  
 275            ------------------------------------------------->JMFF045H19                                          
                                                     <----------------------------------------rJMFF045H19

The following clones don't have the opposite end in this pair.

                                            <----------------------------------------------------------rJMFF039C13-   
                                                   ------------------------------------------------->JMFN013B06-      
                                                 <----------------------------------------------------rJMFF025J10-    
                                                         ----------------------------------->JMFN046D02-              
                             ------------------------------------------------>JMFN004K20-                             
        ---------------------------------------------->JMFS165H07-