| clone | seq. | 5'-sequence | 3'-sequence | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
| JMFF009B02 | Sequence | 568 | 009275 (20) | ref|XP_010106863.1| | 8e-68 | 60S ribosomal protein L3 [Morus notabilis] gb|EXC12323.1| 60S ribosomal protein | 428 | 009275 (20) | ref|NP_001233997.1| | 1e-39 | ribosomal protein L3 [Solanum lycopersicum] gb|AAR17783.1| ribosomal protein L3 |
| JMFF034H05 | Sequence | 455 | 009275 (20) | ref|XP_004138383.1| | 5e-59 | PREDICTED: 60S ribosomal protein L3-like [Cucumis sativus] ref|XP_004160742.1| P | 699 | 009275 (20) | emb|CDO97512.1| | 6e-133 | unnamed protein product [Coffea canephora] |
| JMFF035H23 | Sequence | 553 | 009275 (20) | ref|XP_009786904.1| | 6e-86 | PREDICTED: 60S ribosomal protein L3 [Nicotiana sylvestris] | 734 | 009275 (20) | emb|CDO97512.1| | 1e-135 | unnamed protein product [Coffea canephora] |
| JMFF048M16 | Sequence | 338 | 009275 (20) | emb|CBI18223.3| | 9e-52 | unnamed protein product [Vitis vinifera] | 215 | 009275 (20) | |||
| JMFN028F24 | Sequence | 621 | 009275 (20) | dbj|BAA83471.1| | 4e-129 | Csf-3 [Cucumis sativus] | |||||
| JMSF017K22 | Sequence | 222 | 009275 (20) | gb|KDO83773.1| | 8e-23 | hypothetical protein CISIN_1g038172mg, partial [Citrus sinensis] | 787 | 009275 (20) | emb|CDO97512.1| | 5e-152 | unnamed protein product [Coffea canephora] |
| JMSF023K13 | Sequence | 673 | 009275 (20) | ref|XP_009603806.1| | 2e-138 | PREDICTED: 60S ribosomal protein L3 [Nicotiana tomentosiformis] ref|XP_009603807 | 790 | 009275 (20) | emb|CDO97512.1| | 6e-144 | unnamed protein product [Coffea canephora] |
| JMSF028N07 | Sequence | 673 | 009275 (20) | ref|XP_009786904.1| | 2e-118 | PREDICTED: 60S ribosomal protein L3 [Nicotiana sylvestris] | 803 | 009275 (20) | ref|XP_009786904.1| | 7e-158 | PREDICTED: 60S ribosomal protein L3 [Nicotiana sylvestris] |
| JMSF051I06 | Sequence | 687 | 009275 (20) | ref|XP_009786904.1| | 6e-118 | PREDICTED: 60S ribosomal protein L3 [Nicotiana sylvestris] | 749 | 009275 (20) | emb|CDO97512.1| | 3e-144 | unnamed protein product [Coffea canephora] |
| JMSF052C10 | Sequence | 687 | 009275 (20) | ref|XP_009786904.1| | 6e-120 | PREDICTED: 60S ribosomal protein L3 [Nicotiana sylvestris] | 954 | 009275 (20) | ref|XP_009603806.1| | 2e-175 | PREDICTED: 60S ribosomal protein L3 [Nicotiana tomentosiformis] ref|XP_009603807 |
Explanatory notes: "*" The opposite end is in another contig. "**" The opposite end is in same contig. "#" The opposite end is singlet. "-" The opposite end has no seqence.
SCORE============================================Contig009275============================================1405 7 ----------------------->JMFF048M16 <--------------rJMFF048M16 32 --------------------------------------->JMFF035H23 <---------------------------------------------------rJMFF035H23 32 ---------------------------------------->JMFF009B02 <-----------------------------rJMFF009B02 32 ------------------------------------------------>JMSF052C10 <------------------------------------------------------------------rJMSF052C10 40 --------------->JMSF017K22 <-------------------------------------------------------rJMSF017K22 45 ------------------------------->JMFF034H05 <-------------------------------------------------rJMFF034H05 49 ------------------------------------------------>JMSF051I06 <----------------------------------------------------rJMSF051I06 63 ----------------------------------------------->JMSF028N07 <--------------------------------------------------------rJMSF028N07 237 ----------------------------------------------->JMSF023K13 <-----------------------------------------------------rJMSF023K13
The following clones don't have the opposite end in this pair.
------------------------------------------->JMFN028F24- ------------------------>JMSF006B19*