List of clones in pair P016667.

cloneseq.5'-sequence3'-sequence
lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006G03Sequence569007770 (81)gb|AFU50387.1|2e-104chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 768007770 (81)gb|ABX84141.1|3e-140rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMFF007E22Sequence561007770 (81)gb|AFU50381.1|9e-103chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 748007770 (81)gb|ABX84141.1|1e-95rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMFF007P06Sequence566007770 (81)gb|AFU50381.1|1e-63chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 728007770 (81)gb|ABX84141.1|4e-85rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMFF009J24Sequence609007770 (81)gb|AFU50387.1|7e-116chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 705007770 (81)gb|ABX84141.1|8e-96rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMFF019G05Sequence564007770 (81)gb|AFU50387.1|9e-104chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 719007770 (81)gb|ABX84141.1|9e-105rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMFF027B21Sequence565007770 (81)gb|AFU50381.1|4e-63chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 737007770 (81)gb|ABX84141.1|2e-96rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMFF027M24Sequence566007770 (81)gb|AFU50387.1|2e-104chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 698007770 (81)gb|ABX84141.1|6e-95rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMFF029F19Sequence480007770 (81)gb|AFU50387.1|1e-81chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 534007770 (81)gb|ABX84141.1|1e-64rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMFF038H09Sequence522007770 (81)gb|AFU50387.1|6e-93chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 671007770 (81)gb|AFU50386.1|3e-96chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform
JMFF040F06Sequence492007770 (81)gb|AFU50387.1|7e-85chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 769007770 (81)gb|ABX84141.1|2e-143rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMFF041N09Sequence651007770 (81)gb|AFU50387.1|2e-128chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 610007770 (81)gb|ABX84141.1|7e-98rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMFF046B02Sequence501007770 (81)gb|AFU50387.1|2e-84chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 504007770 (81)gb|AFU50387.1|2e-42chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform
JMFF046N17Sequence547007770 (81)gb|AFU50381.1|2e-93chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 506007770 (81)gb|ABX84141.1|1e-61rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMFF051O04Sequence619007770 (81)gb|AFU50387.1|8e-120chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 608007770 (81)gb|ABX84141.1|6e-71rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMFN016H10Sequence571007770 (81)gb|AFU50381.1|4e-82chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform
JMFN032L19Sequence619007770 (81)gb|AFU50387.1|1e-125chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform
JMSF002I05Sequence335007770 (81)gb|AFU50387.1|1e-44chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 736007770 (81)gb|ABX84141.1|9e-142rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF004B07Sequence244007770 (81)gb|AFU50387.1|2e-24chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 324007770 (81)emb|CAA78702.1|6e-21ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
JMSF004G22Sequence343007770 (81)gb|AFU50381.1|4e-48chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 224007770 (81)emb|CAA78702.1|1e-15ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
JMSF007N23Sequence318007770 (81)gb|AFU50381.1|2e-29chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 750007770 (81)gb|ABX84141.1|4e-146rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF009B12Sequence241007770 (81)gb|AFU50387.1|1e-23chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 791007770 (81)gb|ABX84141.1|7e-140rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF012E03Sequence243007770 (81)gb|AFU50387.1|2e-24chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 775007770 (81)gb|ABX84141.1|3e-109rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF014M21Sequence489007770 (81)gb|AFU50387.1|1e-82chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 784007770 (81)gb|ABX84141.1|2e-155rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF015D24Sequence224007770 (81)gb|ADQ27442.1|2e-43chloroplast Rubisco activase [Solanum tuberosum]763007770 (81)gb|ABX84141.1|4e-102rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF018D04Sequence336007770 (81)gb|AFU50381.1|3e-48chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 745007770 (81)gb|ABX84141.1|2e-128rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF020K08Sequence646007770 (81)gb|AFU50387.1|6e-127chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 771007770 (81)gb|ABX84141.1|4e-135rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF023P10Sequence595007770 (81)gb|AFU50387.1|1e-103chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 793007770 (81)gb|ABX84141.1|6e-156rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF024I15Sequence653007770 (81)gb|AFU50387.1|4e-126chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 736007770 (81)gb|ABX84141.1|9e-142rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF028D06Sequence653007770 (81)gb|AFU50387.1|4e-126chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 751007770 (81)gb|ABX84141.1|1e-145rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF030P15Sequence651007770 (81)gb|AFU50387.1|4e-126chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 783007770 (81)gb|ABX84141.1|2e-155rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF037L10Sequence652007770 (81)gb|AFU50387.1|4e-126chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 730007770 (81)gb|ABX84141.1|2e-139rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF041C15Sequence673007770 (81)gb|AFU50387.1|3e-132chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 676007770 (81)gb|ABX84141.1|4e-96rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF042H17Sequence768007770 (81)gb|AFU50387.1|7e-157chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 757007770 (81)gb|ABX84141.1|4e-113rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF043H17Sequence501007770 (81)gb|ABX84141.1|1e-91rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF045E20Sequence677007770 (81)gb|AFU50387.1|2e-131chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 798007770 (81)gb|AFU50386.1|6e-157chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform
JMSF045J23Sequence649007770 (81)gb|AFU50387.1|2e-144chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 751007770 (81)gb|ABX84141.1|6e-134rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF045N02Sequence674007770 (81)gb|AFU50387.1|3e-132chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 724007770 (81)gb|ABX84141.1|1e-138rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF046N10Sequence269007770 (81)emb|CAA78702.1|3e-09ribulose bisphosphate carboxylase activase [Nicotiana tabacum]217007770 (81)emb|CAA78702.1|2e-09ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
JMSF047J23Sequence499007770 (81)gb|ABX84141.1|3e-79rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF050C24Sequence650007770 (81)gb|AFU50387.1|4e-126chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 710007770 (81)gb|ABX84141.1|2e-135rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph
JMSF052G23Sequence611007770 (81)gb|AFU50387.1|7e-116chloroplast ribulose bisphosphate carboxylase/oxygenase activase small isoform 890007770 (81)gb|ABX84141.1|0.0rubisco activase [Ipomoea batatas] gb|AFU50385.1| chloroplast ribulose bisphosph

Contig 7770 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.

SCORE============================================Contig007770============================================1691         
  46    ----------------------------->JMFF046B02                                                                      
                                                                           <-----------------------------rJMFF046B02  
  52    ------------------------------------>JMFF051O04                                                               
                                                                     <-----------------------------------rJMFF051O04  
 101    ---------------------------->JMFF029F19                                                                       
                                                                      <-------------------------------rJMFF029F19  
 101    --------------------------------->JMFF007P06                                                                  
                                                           <------------------------------------------rJMFF007P06  
 102    --------------------------------->JMFF019G05                                                                  
                                                           <------------------------------------------rJMFF019G05  
 102    --------------------------------->JMFF027M24                                                                  
                                                            <----------------------------------------rJMFF027M24  
 106    --------------------------------->JMFF007E22                                                                  
                                                          <------------------------------------------rJMFF007E22  
 122    ------------->JMSF009B12                                                                                      
                                                     <----------------------------------------------rJMSF009B12  
 124    ------------->JMSF012E03                                                                                      
                                                      <---------------------------------------------rJMSF012E03  
 130    --------------------------------------------->JMSF042H17                                                      
                                                       <--------------------------------------------rJMSF042H17  
 132    ------------->JMSF004B07                                                                                      
                                                                                <------------------rJMSF004B07  
 133    ------------------------------------->JMSF020K08                                                              
                                                       <--------------------------------------------rJMSF020K08  
 136 ------------------>JMSF007N23                                                                                    
                                                    <--------------------------------------------rJMSF007N23  
 141     ------------------->JMSF018D04                                                                               
                                                        <--------------------------------------------rJMSF018D04  
 142    -------------------------------------->JMFF041N09                                                             
                                                               <-----------------------------------rJMFF041N09  
 147    ------------------------------>JMFF046N17                                                                     
                                                                       <---------------------------rJMFF046N17  
 150    ----------------------------------->JMFF009J24                                                                
                                                          <----------------------------------------rJMFF009J24  
 151  ---------------------------------->JMSF023P10                                                                   
                                                  <----------------------------------------------rJMSF023P10  
 153    ------------------------------>JMFF038H09                                                                     
                                                           <---------------------------------------rJMFF038H09  
 153    --------------------------------->JMFF006G03                                                                  
                                                     <---------------------------------------------rJMFF006G03  
 164    ---------------------------->JMFF040F06                                                                       
                                                     <--------------------------------------------rJMFF040F06  
 164    -------------------------------->JMFF027B21                                                                   
                                                       <------------------------------------------rJMFF027B21  
 175   ---------------------------->JMSF014M21                                                                        
                                                  <----------------------------------------------rJMSF014M21  
 175   -------------------------------------->JMSF024I15                                                              
                                                     <-------------------------------------------rJMSF024I15  
 175   -------------------------------------->JMSF028D06                                                              
                                                    <--------------------------------------------rJMSF028D06  
 175   -------------------------------------->JMSF037L10                                                              
                                                      <------------------------------------------rJMSF037L10  
 177    ----------------------------------->JMSF052G23                                                                
                                            <----------------------------------------------------rJMSF052G23  
 177    -------------------------------------->JMSF030P15                                                             
                                                  <----------------------------------------------rJMSF030P15  
 178    ------------------->JMSF002I05                                                                                
                                                     <-------------------------------------------rJMSF002I05  
 178    -------------------------------------->JMSF050C24                                                             
                                                       <------------------------------------------rJMSF050C24  
 181   --------------------------------------->JMSF045E20                                                             
                                                 <----------------------------------------------rJMSF045E20  
 184    --------------------------------------->JMSF041C15                                                            
                                                           <-------------------------------------rJMSF041C15  
 197    --------------------------------------->JMSF045N02                                                            
                                                      <-----------------------------------------rJMSF045N02  
 239    ------------------->JMSF004G22                                                                                
                                                                                 <------------rJMSF004G22  
 258           ------------------------------------->JMSF045J23                                                       
                                                      <--------------------------------------------rJMSF045J23  
 790                                           ------------>JMSF015D24                                                
                                                       <--------------------------------------------rJMSF015D24  
1471                                                                                --------------->JMSF046N10        
                                                                                    <------------rJMSF046N10

The following clones don't have the opposite end in this pair.

        ----------------------->JMSF009G16*                                                                           
                                                      <--------------------------rJMSF044F12#                         
         ------------------------------------>JMFN032L19-                                                             
        --------------------------------------->JMSF050O04*                                                           
                                                                <----------------------------rJMSF043H17-             
         --------------------------------->JMFN016H10-                                                                
                                                               <-----------------------------rJMSF047J23-