clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF010A24 | Sequence | 567 | 008517 (12) | ref|XP_006384170.1| | 2e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | 612 | 008517 (12) | ref|XP_006384170.1| | 4e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| |
JMFN006A17 | Sequence | 599 | 008517 (12) | ref|XP_006384170.1| | 3e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | |||||
JMFN008H17 | Sequence | 614 | 008517 (12) | ref|XP_006384170.1| | 4e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | |||||
JMFN011J04 | Sequence | 531 | 008517 (12) | ref|XP_006384170.1| | 4e-57 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | |||||
JMFN031H02 | Sequence | 563 | 008517 (12) | gb|AGH68506.1| | 3e-63 | histone H2B.1, partial [Ipomoea batatas] | |||||
JMFN034K19 | Sequence | 568 | 008517 (12) | ref|XP_006384170.1| | 2e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | |||||
JMFN038I22 | Sequence | 625 | 008517 (12) | ref|XP_006384170.1| | 5e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | |||||
JMSF021L08 | Sequence | 667 | 008517 (12) | ref|XP_006384170.1| | 7e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | 605 | 008517 (12) | ref|XP_006384170.1| | 3e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| |
JMSF047D11 | Sequence | 694 | 008517 (12) | ref|XP_006384170.1| | 1e-57 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| | 642 | 008517 (12) | ref|XP_006384170.1| | 5e-58 | hypothetical protein POPTR_0004s09030g [Populus trichocarpa] ref|XP_011002796.1| |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig008517============================================ 656 15 ------------------------------------------------------------------------------->JMSF047D11 <-------------------------------------------------------------------------------------------------rJMSF047D11 44 ------------------------------------------------------------------------------------->JMFF010A24 <--------------------------------------------------------------------------------------------rJMFF010A24 50 ------------------------------------------------------------------------------->JMSF021L08 <-------------------------------------------------------------------------------------------rJMSF021L08
The following clones don't have the opposite end in this pair.
------------------------------------------------------------------------------>JMFN011J04- --------------------------------------------------------------------------------------------->JMFN038I22- ------------------------------------------------------------------------------------->JMFN031H02- ------------------------------------------------------------------------------------------>JMFN006A17- --------------------------------------------------------------------------------------------->JMFN008H17- -------------------------------------------------------------------------------------->JMFN034K19-