List of clones in pair P016628.

clone	seq.	5'-sequence					3'-sequence
clone	seq.	length	contig	BestHit	Evalue	description	length	contig	BestHit	Evalue	description
JMFF039P08	Sequence	603	008298 (38)	ref\|XP_007043804.1\|	6e-46	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_	626	008298 (38)	ref\|XP_007043804.1\|	8e-46	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN003J13	Sequence	573	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN003O02	Sequence	531	008298 (38)	ref\|XP_007043804.1\|	2e-44	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN004J10	Sequence	342	008298 (38)	gb\|AFK49621.1\|	2e-20	unknown [Lotus japonicus]
JMFN007O11	Sequence	572	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN012G16	Sequence	579	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN017N10	Sequence	564	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN018M20	Sequence	596	008298 (38)	ref\|XP_007043804.1\|	3e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN025I11	Sequence	590	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN025J19	Sequence	509	008298 (38)	ref\|XP_007043804.1\|	3e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN028J22	Sequence	421	008298 (38)	ref\|XP_007043804.1\|	4e-45	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN029L05	Sequence	560	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN030L15	Sequence	634	008298 (38)	ref\|XP_007043804.1\|	4e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN030N12	Sequence	644	008298 (38)	ref\|XP_007043804.1\|	4e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN036L24	Sequence	445	008298 (38)	ref\|XP_007043804.1\|	2e-45	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN044L01	Sequence	571	008298 (38)	ref\|XP_007043804.1\|	7e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMFN044P12	Sequence	602	008298 (38)	ref\|XP_007043804.1\|	3e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMSF007G21	Sequence	265	008298 (38)	ref\|XP_007043804.1\|	1e-11	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_	593	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMSF018A11	Sequence	456	008298 (38)	ref\|XP_007043804.1\|	5e-48	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_	580	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMSF020O02	Sequence	631	008298 (38)	ref\|XP_007043804.1\|	3e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_	587	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMSF021H17	Sequence	631	008298 (38)	ref\|XP_007043804.1\|	3e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_	585	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMSF022G12	Sequence	597	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_	554	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMSF024J24	Sequence	622	008298 (38)	ref\|XP_007043804.1\|	1e-31	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_	590	008298 (38)	ref\|XP_007043804.1\|	1e-31	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMSF033O17	Sequence	634	008298 (38)	ref\|XP_007043804.1\|	3e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_	592	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMSF035C19	Sequence	653	008298 (38)	ref\|XP_007043804.1\|	5e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_	593	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMSF044L09	Sequence	653	008298 (38)	ref\|XP_007043804.1\|	3e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_	616	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_
JMSF044O21	Sequence	671	008298 (38)	ref\|XP_007043804.1\|	5e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_	587	008298 (38)	ref\|XP_007043804.1\|	2e-47	Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref\|XP_

Contig 8298 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes: "*" The opposite end is in another contig. "**" The opposite end is in same contig. "#" The opposite end is singlet. "-" The opposite end has no seqence.

SCORE============================================Contig008298============================================ 699         
  72 ------------------------------------------------------------------------------------->JMFF039P08                 
     <-----------------------------------------------------------------------------------------rJMFF039P08  
  83    -------------------------------------------------------------------------------------------->JMSF044L09       
        <---------------------------------------------------------------------------------------rJMSF044L09  
  91     ----------------------------------------------------------------------------------------------->JMSF044O21   
            <-----------------------------------------------------------------------------------rJMSF044O21  
 105     -------------------------------------------------------------------------------------------->JMSF035C19      
         <------------------------------------------------------------------------------------rJMSF035C19  
 106    ------------------------------------->JMSF007G21                                                              
        <------------------------------------------------------------------------------------rJMSF007G21  
 107    ---------------------------------------------------------------------------------------->JMSF024J24           
        <------------------------------------------------------------------------------------rJMSF024J24  
 110     ----------------------------------------------------------------------------------------->JMSF033O17         
         <-----------------------------------------------------------------------------------rJMSF033O17  
 111     ----------------------------------------------------------------------------------------->JMSF020O02         
         <-----------------------------------------------------------------------------------rJMSF020O02  
 117      ---------------------------------------------------------------------------------------->JMSF021H17         
          <----------------------------------------------------------------------------------rJMSF021H17  
 120     ---------------------------------------------------------------->JMSF018A11                                  
         <----------------------------------------------------------------------------------rJMSF018A11  
 154     ----------------------------------------------------------------------------------->JMSF022G12               
         <-----------------------------------------------------------------------------rJMSF022G12

The following clones don't have the opposite end in this pair.

            --------------------------------------------------------------------------------->JMFN003J13-             
            ------------------------------------------------------------------------------------------->JMFN030N12-   
             ------------------------------------------------------------------------>JMFN025J19-                     
                                                 ------------------------------------------------>JMFN004J10-         
               ---------------------------------------------------------------------------------->JMFN012G16-         
           ------------------------------------------------------------------------------------>JMFN018M20-           
                 -------------------------------------------------------------------------------->JMFN017N10-         
             ----------------------------------------------------------->JMFN028J22-                                  
               --------------------------------------------------------------------------------->JMFN044L01-          
            --------------------------------------------------------------->JMFN036L24-                               
                                          ------------------------------------------------------->JMFN030L15-         
                 ------------------------------------------------------------------------------->JMFN029L05-          
                       --------------------------------------------------------------------------->JMFN003O02-        
           ------------------------------------------------------------------------------------->JMFN044P12-          
             ------------------------------------------------------------------------------------>JMFN025I11-         
               --------------------------------------------------------------------------------->JMFN007O11-