List of clones in pair P016515.

cloneseq.5'-sequence3'-sequence
lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014K11Sequence328009393 (41)ref|XP_007049480.1|1e-31Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao] gb|EOX93637.1771009393 (41)ref|XP_008229753.1|4e-132PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]
JMFF028O18Sequence491009393 (41)ref|XP_008229753.1|6e-105PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]690009393 (41)ref|XP_008229753.1|9e-117PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]
JMFF030D22Sequence507009393 (41)ref|XP_011008196.1|1e-87PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Populus euphratica678009393 (41)ref|XP_008229753.1|8e-110PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]
JMFF033P14Sequence519009393 (41)ref|XP_011008196.1|3e-88PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Populus euphratica714009393 (41)ref|XP_008229753.1|4e-120PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]
JMFF034B23Sequence539009393 (41)ref|XP_007049480.1|1e-56Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao] gb|EOX93637.1675009393 (41)ref|XP_008229753.1|3e-114PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]
JMFF046J03Sequence535009393 (41)ref|XP_011008196.1|1e-95PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Populus euphratica464009393 (41)gb|AAR85970.1|2e-35type III chlorophyll a/b-binding protein [Nicotiana tabacum]
JMFN007A08Sequence600009393 (41)ref|XP_010547181.1|2e-84PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Tarenaya hassleria
JMFN008O15Sequence642009393 (41)ref|XP_002273201.1|2e-121PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis vinifera]
JMFN017I01Sequence627009393 (41)ref|XP_011008196.1|6e-124PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Populus euphratica
JMFN040A09Sequence437009393 (41)prf||1609235A3e-41chlorophyll a/b binding protein
JMSF013K13Sequence253009393 (41)ref|XP_011008196.1|3e-24PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Populus euphratica789009393 (41)ref|XP_006857558.1|1e-96hypothetical protein AMTR_s00061p00059490 [Amborella trichopoda] gb|ERN19025.1|
JMSF017G14Sequence525009393 (41)ref|XP_011008196.1|2e-91PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Populus euphratica750009393 (41)ref|XP_008229753.1|4e-136PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]
JMSF018N04Sequence496009393 (41)ref|XP_011008196.1|2e-91PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Populus euphratica720009393 (41)ref|XP_008229753.1|4e-129PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]
JMSF024E20Sequence602009393 (41)ref|XP_011008196.1|6e-109PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Populus euphratica756009393 (41)ref|XP_008229753.1|4e-138PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]
JMSF027D19Sequence619009393 (41)ref|XP_007049480.1|8e-110Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao] gb|EOX93637.1762009393 (41)ref|XP_008229753.1|2e-129PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]
JMSF027F04Sequence590009393 (41)ref|XP_011008196.1|1e-109PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Populus euphratica758009393 (41)ref|XP_008229753.1|3e-130PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]
JMSF028D08Sequence629009393 (41)ref|XP_007049480.1|2e-107Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao] gb|EOX93637.1754009393 (41)ref|XP_008229753.1|3e-136PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]
JMSF029B12Sequence661009393 (41)ref|XP_002273201.1|1e-118PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis vinifera]759009393 (41)ref|XP_008229753.1|4e-127PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]
JMSF029O17Sequence615009393 (41)ref|XP_002273201.1|3e-112PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis vinifera]750009393 (41)ref|XP_008229753.1|9e-136PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]
JMSF034E01Sequence609009393 (41)ref|XP_011008196.1|2e-108PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Populus euphratica697009393 (41)ref|XP_008229753.1|2e-108PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Prunus mume]
JMSF038D03Sequence890009393 (41)ref|XP_011008196.1|1e-154PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Populus euphratica
JMSF052F08Sequence653009393 (41)ref|XP_002273201.1|8e-121PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis vinifera]943009393 (41)ref|XP_011008196.1|5e-154PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Populus euphratica
JMSF052I17Sequence593009393 (41)ref|XP_011008196.1|4e-108PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Populus euphratica870009393 (41)ref|XP_007049480.1|1e-157Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao] gb|EOX93637.1

Contig 9393 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.

SCORE============================================Contig009393============================================1075         
  28    ------------------------------------------------->JMFF046J03                                                  
                                                              <------------------------------------------rJMFF046J03  
  95 -------------------------------------------------------->JMSF034E01                                              
                                  <--------------------------------------------------------------rJMSF034E01  
  95 --------------------------------------------------------->JMSF027D19                                             
                         <----------------------------------------------------------------------rJMSF027D19  
 100 ------------------------------------------------------------->JMSF029B12                                         
                          <---------------------------------------------------------------------rJMSF029B12  
 114   ---------------------------------------------->JMFF030D22                                                      
                                 <--------------------------------------------------------------rJMFF030D22  
 119   ------------------------------------------------------------>JMSF052F08                                        
         <--------------------------------------------------------------------------------------rJMSF052F08  
 127   ---------------------->JMSF013K13                                                                              
                      <------------------------------------------------------------------------rJMSF013K13  
 132    ----------------------------------------------->JMFF033P14                                                    
                             <------------------------------------------------------------------rJMFF033P14  
 132    ------------------------------------------------------>JMSF027F04                                             
                         <----------------------------------------------------------------------rJMSF027F04  
 151   ------------------------------------------------------>JMSF052I17                                              
            <--------------------------------------------------------------------------------rJMSF052I17  
 152   ------------------------------------------------------->JMSF024E20                                             
                      <----------------------------------------------------------------------rJMSF024E20  
 152   -------------------------------------------------------->JMSF029O17                                            
                       <---------------------------------------------------------------------rJMSF029O17  
 153   ------------------------------------------------>JMSF017G14                                                    
                      <---------------------------------------------------------------------rJMSF017G14  
 184      --------------------------------------------->JMSF018N04                                                    
                         <------------------------------------------------------------------rJMSF018N04  
 283                 -------------------------------->JMFF034B23                                                      
                               <--------------------------------------------------------------rJMFF034B23  
 300                 ------------>JMFF014K11                                                                          
                      <----------------------------------------------------------------------rJMFF014K11  
 302                 ---------------------------------------->JMSF028D08                                              
                      <---------------------------------------------------------------------rJMSF028D08  
 305                   --------------------------------------------->JMFF028O18                                       
                              <---------------------------------------------------------------rJMFF028O18

The following clones don't have the opposite end in this pair.

                                           ---------------------------------------------------->JMFN007A08-           
                 ---------------------------------------------------------->JMFN017I01-                               
         ----------------------------------------------------------->JMFN008O15-                                      
              <----------------------------------------------------------------------------------rJMSF038D03-         
                                                            ------------------------->JMFN040A09-