clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF051E23 | Sequence | 519 | 007788 (12) | ref|XP_009617738.1| | 158 | PREDICTED: uncharacterized protein LOC104110026 [Nicotiana tomentosiformis] | 447 | 007788 (12) | ref|XP_002523386.1| | 3e-12 | conserved hypothetical protein [Ricinus communis] gb|EEF38965.1| conserved hypot |
JMFF051G05 | Sequence | 625 | 007788 (12) | ref|XP_009776091.1| | 177 | PREDICTED: uncharacterized protein LOC104225913 [Nicotiana sylvestris] ref|XP_00 | 447 | 007788 (12) | ref|XP_002523386.1| | 7e-08 | conserved hypothetical protein [Ricinus communis] gb|EEF38965.1| conserved hypot |
JMSF014F05 | Sequence | 574 | 007788 (12) | ref|XP_009776091.1| | 177 | PREDICTED: uncharacterized protein LOC104225913 [Nicotiana sylvestris] ref|XP_00 | 814 | 007788 (12) | ref|XP_006358732.1| | 158 | PREDICTED: uncharacterized protein LOC102603557 [Solanum tuberosum] |
JMSF047B20 | Sequence | 686 | 007788 (12) | ref|XP_009776091.1| | 226 | PREDICTED: uncharacterized protein LOC104225913 [Nicotiana sylvestris] ref|XP_00 | 776 | 007788 (12) | ref|XP_006358732.1| | 216 | PREDICTED: uncharacterized protein LOC102603557 [Solanum tuberosum] |
JMSF050P03 | Sequence | 621 | 007788 (12) | ref|XP_009776091.1| | 196 | PREDICTED: uncharacterized protein LOC104225913 [Nicotiana sylvestris] ref|XP_00 | 749 | 007788 (12) | ref|XP_009776091.1| | 196 | PREDICTED: uncharacterized protein LOC104225913 [Nicotiana sylvestris] ref|XP_00 |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig007788============================================1521 135 -------------------------------->JMFF051E23 <----------------------------rJMFF051E23 138 ------------------------------------->JMFF051G05 <----------------------------rJMFF051G05 152 ------------------------------------->JMSF014F05 <---------------------------------------------------rJMSF014F05 192 ------------------------------------->JMSF050P03 <-----------------------------------------------rJMSF050P03 192 -------------------------------------------->JMSF047B20 <-------------------------------------------------rJMSF047B20
The following clones don't have the opposite end in this pair.
--------------->JMSF010K19# <------------------------------------------rJMSF041M05*