clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF041J15 | Sequence | 649 | 013021 (18) | ref|XP_009593521.1| | 8e-92 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana tomentosiformis] | 637 | 013021 (18) | ref|XP_009776648.1| | 7e-80 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana sylvestris] ref| |
JMFN009C06 | Sequence | 614 | 013021 (18) | ref|XP_009769979.1| | 1e-93 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana sylvestris] | |||||
JMFN011G05 | Sequence | 576 | 013021 (18) | ref|XP_009593521.1| | 3e-50 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana tomentosiformis] | |||||
JMFN035J24 | Sequence | 669 | 013021 (18) | ref|XP_009769979.1| | 3e-91 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana sylvestris] | |||||
JMSF010H01 | Sequence | 390 | 013021 (18) | ref|XP_009769979.1| | 1e-39 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana sylvestris] | 713 | 013021 (18) | ref|XP_009769979.1| | 1e-90 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana sylvestris] |
JMSF030I14 | Sequence | 652 | 013021 (18) | ref|XP_009593521.1| | 8e-92 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana tomentosiformis] | 738 | 013021 (18) | ref|XP_009593521.1| | 3e-91 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana tomentosiformis] |
JMSF032A03 | Sequence | 726 | 013021 (18) | ref|XP_009769979.1| | 2e-91 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana sylvestris] | 697 | 013021 (18) | ref|XP_009769979.1| | 2e-91 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana sylvestris] |
JMSF045M04 | Sequence | 426 | 013021 (18) | ref|XP_009593521.1| | 5e-46 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana tomentosiformis] | 251 | 013021 (18) | ref|XP_009776648.1| | 5e-30 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana sylvestris] ref| |
JMSF045N04 | Sequence | 806 | 013021 (18) | ref|XP_009593521.1| | 8e-89 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana tomentosiformis] | 719 | 013021 (18) | ref|XP_009593521.1| | 4e-89 | PREDICTED: 50S ribosomal protein L24, chloroplastic [Nicotiana tomentosiformis] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig013021============================================ 908 114 ----------------------------------------------------------------------->JMFF041J15 <---------------------------------------------------------------------rJMFF041J15 128 ---------------------------------------------------------------------------------------->JMSF045N04 <------------------------------------------------------------------------------rJMSF045N04 155 ----------------------------------------------------------------------->JMSF030I14 <-------------------------------------------------------------------------------rJMSF030I14 168 ------------------------------------------>JMSF010H01 <----------------------------------------------------------------------------rJMSF010H01 212 ------------------------------------------------------------------------------->JMSF032A03 <----------------------------------------------------------------------------rJMSF032A03 469 ---------------------------------------------->JMSF045M04 <---------------------------rJMSF045M04
The following clones don't have the opposite end in this pair.
------------------------------------------------------------------>JMFN009C06- <-----------------------------------------------------------------------rJMSF045H05# <---------------------rJMSF031I14* ------------------------------------------------------------------------->JMFN035J24- <---------------------------------------------------------------rJMSF036D23# <--------------------------------------------------------------JMFN011G05-