| clone | seq. | 5'-sequence | 3'-sequence | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
| JMFF001C01 | Sequence | 524 | 000544 (13) | ref|XP_009610057.1| | 2e-35 | PREDICTED: protein PAM68, chloroplastic [Nicotiana tomentosiformis] | 687 | 000544 (13) | emb|CDP14931.1| | 3e-45 | unnamed protein product [Coffea canephora] |
| JMFN036P08 | Sequence | 556 | 000544 (13) | ref|XP_011092614.1| | 1e-41 | PREDICTED: protein PAM68, chloroplastic [Sesamum indicum] | |||||
| JMSF001K13 | Sequence | 315 | 000544 (13) | 713 | 000544 (13) | ref|XP_009610057.1| | 1e-46 | PREDICTED: protein PAM68, chloroplastic [Nicotiana tomentosiformis] | |||
| JMSF012L07 | Sequence | 517 | 000544 (13) | ref|XP_009610057.1| | 6e-20 | PREDICTED: protein PAM68, chloroplastic [Nicotiana tomentosiformis] | 724 | 000544 (13) | ref|XP_009610057.1| | 1e-46 | PREDICTED: protein PAM68, chloroplastic [Nicotiana tomentosiformis] |
| JMSF020A19 | Sequence | 569 | 000544 (13) | ref|XP_009610057.1| | 4e-26 | PREDICTED: protein PAM68, chloroplastic [Nicotiana tomentosiformis] | 709 | 000544 (13) | ref|XP_009610057.1| | 2e-46 | PREDICTED: protein PAM68, chloroplastic [Nicotiana tomentosiformis] |
| JMSF031A21 | Sequence | 671 | 000544 (13) | ref|XP_009610057.1| | 3e-46 | PREDICTED: protein PAM68, chloroplastic [Nicotiana tomentosiformis] | 629 | 000544 (13) | emb|CDP14931.1| | 2e-45 | unnamed protein product [Coffea canephora] |
| JMSF036O17 | Sequence | 685 | 000544 (13) | ref|XP_009610057.1| | 4e-46 | PREDICTED: protein PAM68, chloroplastic [Nicotiana tomentosiformis] | 727 | 000544 (13) | ref|XP_009610057.1| | 2e-46 | PREDICTED: protein PAM68, chloroplastic [Nicotiana tomentosiformis] |
Explanatory notes: "*" The opposite end is in another contig. "**" The opposite end is in same contig. "#" The opposite end is singlet. "-" The opposite end has no seqence.
SCORE============================================Contig000544============================================ 833 49 ------------------------------------------------------------------->JMSF020A19 <-----------------------------------------------------------------------------------rJMSF020A19 58 -------------------------------------------------------------->JMFF001C01 <----------------------------------------------------------------------------------rJMFF001C01 99 ------------------------------------->JMSF001K13 <-------------------------------------------------------------------------------------rJMSF001K13 106 -------------------------------------------------------------------------------->JMSF031A21 <---------------------------------------------------------------------------rJMSF031A21 106 --------------------------------------------------------------------------------->JMSF036O17 <--------------------------------------------------------------------------------------rJMSF036O17 131 ------------------------------------------------------------->JMSF012L07 <-----------------------------------------------------------------------------------rJMSF012L07
The following clones don't have the opposite end in this pair.
------------------------------------------------------------------>JMFN036P08-