List of clones in pair P015220.

cloneseq.5'-sequence3'-sequence
lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002D18Sequence184003162 (62)ref|XP_009770890.1|2e-04PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Nicoti411003162 (62)gb|AAD27882.2|AF139470_11e-71chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFF010F07Sequence556003162 (62)ref|XP_009613269.1|6e-58PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t418003162 (62)gb|AAD27882.2|AF139470_15e-72chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFF010N16Sequence557003162 (62)ref|XP_009613269.1|8e-43PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t416003162 (62)gb|AAD27882.2|AF139470_12e-71chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFF014E03Sequence416003162 (62)gb|AAD27882.2|AF139470_12e-71chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFF019E24Sequence561003162 (62)ref|XP_009613269.1|2e-60PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t415003162 (62)gb|AAD27882.2|AF139470_12e-71chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFF022A08Sequence430003162 (62)ref|XP_009613269.1|2e-42PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t412003162 (62)gb|AAD27882.2|AF139470_11e-71chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFF025G03Sequence569003162 (62)ref|XP_009613269.1|8e-84PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t418003162 (62)gb|AAD27882.2|AF139470_15e-73chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFF029C18Sequence563003162 (62)ref|XP_009613269.1|8e-60PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t418003162 (62)gb|AAD27882.2|AF139470_12e-71chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFF029F18Sequence558003162 (62)ref|XP_009613269.1|1e-59PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t412003162 (62)gb|AAD27882.2|AF139470_11e-71chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFF031J04Sequence563003162 (62)ref|XP_009613269.1|2e-60PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t415003162 (62)gb|AAD27882.2|AF139470_12e-71chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFF033D01Sequence306003162 (62)ref|XP_009613269.1|5e-19PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t414003162 (62)gb|AAD27882.2|AF139470_12e-71chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFF034E23Sequence487003162 (62)ref|XP_009613269.1|1e-43PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t413003162 (62)gb|AAD27882.2|AF139470_11e-71chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFF037E12Sequence559003162 (62)ref|XP_009613269.1|1e-56PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t428003162 (62)gb|AAD27882.2|AF139470_14e-73chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFF043C15Sequence598003162 (62)ref|XP_009613269.1|4e-88PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t599003162 (62)gb|AAD27882.2|AF139470_12e-112chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFF048B22Sequence396003162 (62)ref|XP_009613269.1|3e-43PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t393003162 (62)ref|XP_008441527.1|2e-51PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis mel
JMFF049C18Sequence603003162 (62)ref|XP_009613269.1|2e-92PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t628003162 (62)gb|AAD27882.2|AF139470_13e-112chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFN003C23Sequence606003162 (62)ref|XP_009613269.1|3e-97PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t
JMFN008C18Sequence599003162 (62)ref|XP_009613269.1|1e-95PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t
JMFN009B16Sequence483003162 (62)ref|XP_009613269.1|7e-81PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t
JMFN010F05Sequence611003162 (62)ref|XP_009613269.1|8e-108PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t
JMFN010O09Sequence627003162 (62)ref|XP_008441527.1|3e-128PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis mel
JMFN010P24Sequence597003162 (62)ref|XP_009613269.1|1e-95PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t
JMFN012E10Sequence573003162 (62)gb|AAD27882.2|AF139470_15e-97chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFN015L16Sequence532003162 (62)ref|XP_009613269.1|4e-82PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t
JMFN015N24Sequence601003162 (62)ref|XP_009613269.1|1e-95PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t
JMFN019I22Sequence637003162 (62)ref|XP_009613269.1|1e-108PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t
JMFN025I23Sequence585003162 (62)ref|XP_009613269.1|2e-88PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t
JMFN028E15Sequence494003162 (62)ref|XP_008441527.1|3e-83PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis mel
JMFN029I19Sequence559003162 (62)ref|XP_009613269.1|4e-79PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t
JMFN030A22Sequence462003162 (62)gb|AAD27882.2|AF139470_11e-51chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFN031J19Sequence513003162 (62)gb|AAD27882.2|AF139470_11e-101chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMFN033C19Sequence602003162 (62)ref|XP_009613269.1|1e-95PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t
JMFN035I15Sequence524003162 (62)ref|XP_009613269.1|3e-87PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t
JMFN037H02Sequence253003162 (62)ref|XP_011005195.1|9e-27PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populu
JMSF003P07Sequence230003162 (62)691003162 (62)gb|KHN33514.1|3e-105Chlorophyll a-b binding protein CP24 10A, chloroplastic [Glycine soja]
JMSF007D12Sequence465003162 (62)gb|AAD27882.2|AF139470_11e-85chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMSF035C15Sequence633003162 (62)ref|XP_009613269.1|5e-93PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t668003162 (62)gb|KHN33514.1|9e-141Chlorophyll a-b binding protein CP24 10A, chloroplastic [Glycine soja]
JMSF036K24Sequence687003162 (62)ref|XP_009613269.1|4e-113PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t694003162 (62)gb|KHN33514.1|2e-144Chlorophyll a-b binding protein CP24 10A, chloroplastic [Glycine soja]
JMSF043H15Sequence739003162 (62)ref|XP_009613269.1|1e-125PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t761003162 (62)gb|AAD27882.2|AF139470_12e-145chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
JMSF052C12Sequence664003162 (62)ref|XP_009613269.1|2e-107PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t841003162 (62)ref|XP_009613269.1|5e-153PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana t

Contig 3162 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.

SCORE============================================Contig003162============================================ 991         
  28 ------------------------------------------>JMFF022A08                                                            
                                                             <-----------------------------------------rJMFF022A08  
  43    ---------------------------------------------------------->JMFF043C15                                         
                                            <-----------------------------------------------------------rJMFF043C15  
  43    ------------------------------------------------------------>JMFF049C18                                       
                                            <-----------------------------------------------------------rJMFF049C18  
  57    --------------------------------------------->JMFF034E23                                                      
                                                             <-----------------------------------------rJMFF034E23  
  57    ------------------------------------------------------->JMFF010N16                                            
                                                            <-----------------------------------------rJMFF010N16  
  58    ------------------------------------------------------->JMFF010F07                                            
                                                            <-----------------------------------------rJMFF010F07  
  58    -------------------------------------------------------->JMFF029C18                                           
                                                            <-----------------------------------------rJMFF029C18  
  58    -------------------------------------------------------->JMFF029F18                                           
                                                             <-----------------------------------------rJMFF029F18  
  58    -------------------------------------------------------->JMFF031J04                                           
                                                            <-----------------------------------------rJMFF031J04  
  58    -------------------------------------------------------->JMFF037E12                                           
                                                            <-----------------------------------------rJMFF037E12  
  58    --------------------------------------------------------->JMFF025G03                                          
                                                            <-----------------------------------------rJMFF025G03  
  59    ------------------------------>JMFF033D01                                                                     
                                                            <-----------------------------------------rJMFF033D01  
  59  --------------------------------------------------------------->JMSF035C15                                      
                                <-------------------------------------------------------------------rJMSF035C15  
  60  ---------------------->JMSF003P07                                                                               
                              <---------------------------------------------------------------------rJMSF003P07  
  61    ------------------>JMFF002D18                                                                                 
                                                             <-----------------------------------------rJMFF002D18  
  63     -------------------------------------------------------->JMFF019E24                                          
                                                            <-----------------------------------------rJMFF019E24  
  74    --------------------------------------------------------------------->JMSF036K24                              
                              <----------------------------------------------------------------------rJMSF036K24  
  80    ------------------------------------------------------------------>JMSF052C12                                 
               <------------------------------------------------------------------------------------rJMSF052C12  
  89     -------------------------------------------------------------------------->JMSF043H15                        
                       <----------------------------------------------------------------------------rJMSF043H15  
 104     --------------------------------------->JMFF048B22                                                           
                                                                     <-----------------------------rJMFF048B22

The following clones don't have the opposite end in this pair.

                                          ---------------------->JMFN037H02-                                          
          ------------------------------------------------------------>JMFN015N24-                                    
                                                            <-----------------------------------------rJMFF014E03-    
         ------------------------------------------------------>JMFF049O07#                                           
         ------------------------------------------------------->JMFF035K19#                                          
                                                            <------------------------------------------JMFN030A22-    
           ----------------------------------------------------->JMFN015L16-                                          
              ---------------------------------------------------->JMFN035I15-                                        
                                     --------------------------------------------------------------->JMFN010O09-      
                     ---------------------------------------------->JMFN009B16-                                       
          ------------------------------------------------------------>JMFN033C19-                                    
          ------------------------------------------------------------>JMFN010P24-                                    
                                                       ------------------------------------------------->JMFN028E15-  
                                                 <------------------------------------------------------JMFN012E10-   
           ---------------------------------------------------------------->JMFN019I22-                               
          ------------------------------------------------------------->JMFN003C23-                                   
          --------------------------------------------------------->JMFN025I23-                                       
          ------------------------------------------------------------>JMFN008C18-                                    
             ------------------------------------------------------------->JMFN010F05-                                
                                                --------------------------------------------------->JMFN031J19-       
        -------------------------------------------------------->JMFN029I19-                                          
                                                     <----------------------------------------------rJMSF007D12-