clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF005E04 | Sequence | 541 | 006784 (9) | ref|XP_006381718.1| | 1e-27 | hypothetical protein POPTR_0006s16300g [Populus trichocarpa] gb|ERP59515.1| hypo | 725 | 006784 (9) | ref|XP_009608498.1| | 6e-93 | PREDICTED: chloroplast processing peptidase-like isoform X1 [Nicotiana tomentos |
JMFF038G14 | Sequence | 684 | 006784 (9) | ref|XP_009608498.1| | 3e-80 | PREDICTED: chloroplast processing peptidase-like isoform X1 [Nicotiana tomentos | |||||
JMSF041C23 | Sequence | 729 | 006784 (9) | ref|XP_006381718.1| | 2e-72 | hypothetical protein POPTR_0006s16300g [Populus trichocarpa] gb|ERP59515.1| hypo | 619 | 006784 (9) | ref|XP_009608498.1| | 3e-72 | PREDICTED: chloroplast processing peptidase-like isoform X1 [Nicotiana tomentos |
JMSF042N22 | Sequence | 715 | 006784 (9) | ref|XP_006381718.1| | 1e-76 | hypothetical protein POPTR_0006s16300g [Populus trichocarpa] gb|ERP59515.1| hypo | 802 | 006784 (9) | ref|XP_009608498.1| | 6e-106 | PREDICTED: chloroplast processing peptidase-like isoform X1 [Nicotiana tomentos |
JMSF044O23 | Sequence | 726 | 006784 (9) | ref|XP_006381718.1| | 1e-75 | hypothetical protein POPTR_0006s16300g [Populus trichocarpa] gb|ERP59515.1| hypo | 664 | 006784 (9) | ref|XP_009608498.1| | 9e-83 | PREDICTED: chloroplast processing peptidase-like isoform X1 [Nicotiana tomentos |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig006784============================================1243 1 ------------------------------------------->JMFF005E04 <---------------------------------------------------------rJMFF005E04 43 ---------------------------------------------------------->JMSF041C23 <------------------------------------------------rJMSF041C23 94 ---------------------------------------------------------->JMSF044O23 <----------------------------------------------------rJMSF044O23 106 --------------------------------------------------------->JMSF042N22 <---------------------------------------------------------------rJMSF042N22
The following clones don't have the opposite end in this pair.
<------------------------------------------------------rJMFF038G14-