List of clones in pair P015185.

clone	seq.	5'-sequence					3'-sequence
clone	seq.	length	contig	BestHit	Evalue	description	length	contig	BestHit	Evalue	description
JMFF002D17	Sequence	522	005605 (87)	ref\|XP_002510603.1\|	192	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	627	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFF008K06	Sequence	613	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	767	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFF014A13	Sequence						628	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFF015F15	Sequence	661	005605 (87)	ref\|XP_002510603.1\|	228	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	687	005605 (87)	ref\|XP_002510603.1\|	228	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFF016D08	Sequence	652	005605 (87)	ref\|XP_002510603.1\|	226	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	624	005605 (87)	ref\|XP_002510603.1\|	226	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFF017A19	Sequence	633	005605 (87)	ref\|XP_002510603.1\|	225	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	611	005605 (87)	ref\|XP_002510603.1\|	226	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFF021N13	Sequence	532	005605 (87)	ref\|XP_002510603.1\|	204	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	628	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFF023I11	Sequence	524	005605 (87)	ref\|XP_002510603.1\|	199	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	611	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFF035I24	Sequence						620	005605 (87)	ref\|XP_002510603.1\|	228	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFF040D19	Sequence	534	005605 (87)	ref\|XP_002510603.1\|	208	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	611	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFF047D15	Sequence	635	005605 (87)	ref\|XP_002510603.1\|	227	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	591	005605 (87)	ref\|XP_002510603.1\|	227	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFF047G06	Sequence	379	005605 (87)	gb\|AEK78855.1\|	4e-19	DNA damage repair protein/transcription factor [Lepidium latifolium]	303	005605 (87)	pdb\|2PCF\|A	6e-42	Chain A, The Complex Of Cytochrome F And Plastocyanin Determined With Paramagne
JMFF047I12	Sequence	468	005605 (87)	ref\|XP_002893099.1\|	1e-43	DNA-damage-repair/toleration protein 112 [Arabidopsis lyrata subsp. lyrata] gb\|	366	005605 (87)	pdb\|2PCF\|A	3e-49	Chain A, The Complex Of Cytochrome F And Plastocyanin Determined With Paramagne
JMFN004C15	Sequence	569	005605 (87)	ref\|XP_002510603.1\|	231	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN007F16	Sequence	604	005605 (87)	ref\|XP_002510603.1\|	231	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN007K15	Sequence	624	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN007M20	Sequence	625	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN010D01	Sequence	621	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN011E13	Sequence	607	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN017C07	Sequence	612	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN017H09	Sequence	587	005605 (87)	ref\|XP_002510603.1\|	231	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN018A08	Sequence	617	005605 (87)	ref\|XP_002510603.1\|	228	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN018L08	Sequence	618	005605 (87)	ref\|XP_002510603.1\|	223	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN019L17	Sequence	604	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN020E14	Sequence	596	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN028I24	Sequence	586	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN029I04	Sequence	618	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN030B16	Sequence	616	005605 (87)	ref\|XP_002510603.1\|	224	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN030C03	Sequence	557	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN030C05	Sequence	607	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN030G18	Sequence	576	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN032H05	Sequence	618	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN032K19	Sequence	609	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN034E07	Sequence	607	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN034L02	Sequence	597	005605 (87)	ref\|XP_002510603.1\|	228	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN036O02	Sequence	613	005605 (87)	ref\|XP_002510603.1\|	228	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN038A08	Sequence	637	005605 (87)	ref\|XP_002510603.1\|	228	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN038D16	Sequence	609	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFN039D17	Sequence	611	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFS047B10	Sequence	627	005605 (87)	ref\|XP_002510603.1\|	225	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMFS062C10	Sequence	619	005605 (87)	ref\|XP_002510603.1\|	225	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF003J08	Sequence	316	005605 (87)	ref\|XP_011074720.1\|	4e-15	PREDICTED: plastocyanin-like [Sesamum indicum]	588	005605 (87)	ref\|XP_002510603.1\|	231	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF005C04	Sequence	298	005605 (87)	ref\|XP_011074720.1\|	3e-10	PREDICTED: plastocyanin-like [Sesamum indicum]
JMSF005K21	Sequence	311	005605 (87)	ref\|XP_011074720.1\|	2e-12	PREDICTED: plastocyanin-like [Sesamum indicum]	504	005605 (87)	ref\|XP_002510603.1\|	180	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF007C02	Sequence	341	005605 (87)	gb\|AEK78855.1\|	8e-17	DNA damage repair protein/transcription factor [Lepidium latifolium]	591	005605 (87)	ref\|XP_002510603.1\|	228	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF007L08	Sequence	360	005605 (87)	ref\|XP_011074720.1\|	3e-19	PREDICTED: plastocyanin-like [Sesamum indicum]	595	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF023D08	Sequence						496	005605 (87)	ref\|XP_002510603.1\|	178	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF026G09	Sequence	652	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	600	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF031L21	Sequence	633	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	591	005605 (87)	ref\|XP_002510603.1\|	231	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF035B21	Sequence	663	005605 (87)	ref\|XP_002510603.1\|	228	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	596	005605 (87)	ref\|XP_002510603.1\|	196	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF036B03	Sequence	655	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	609	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF036I22	Sequence	646	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	592	005605 (87)	ref\|XP_002510603.1\|	231	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF041J22	Sequence	793	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	757	005605 (87)	ref\|XP_002510603.1\|	180	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF042F02	Sequence	656	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	611	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF047D13	Sequence	688	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	789	005605 (87)	ref\|XP_002510603.1\|	180	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF049J07	Sequence	663	005605 (87)	ref\|XP_002510603.1\|	227	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	777	005605 (87)	pdb\|1AG6\|A	2e-52	Chain A, Plastocyanin From Spinach
JMSF052F04	Sequence	661	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	613	005605 (87)	ref\|XP_002510603.1\|	231	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1
JMSF052G18	Sequence	637	005605 (87)	ref\|XP_002510603.1\|	229	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1	591	005605 (87)	ref\|XP_002510603.1\|	231	Plastocyanin A, chloroplast precursor, putative [Ricinus communis] gb\|EEF52790.1

Contig 5605 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes: "*" The opposite end is in another contig. "**" The opposite end is in same contig. "#" The opposite end is singlet. "-" The opposite end has no seqence.

SCORE============================================Contig005605============================================1014         
   5 ----------------------------------------------------------------->JMSF049J07                                     
                            <----------------------------------------------------------------------------rJMSF049J07  
  32 ------------------------------------------------------------------->JMSF047D13                                   
                          <----------------------------------------------------------------------------rJMSF047D13  
  35  ----------------------------------------------------------------------------->JMSF041J22                        
                             <------------------------------------------------------------------------rJMSF041J22  
 259 ----------------------------------------------------------->JMFF008K06                                           
        <----------------------------------------------------------------------rJMFF008K06  
 292 ------------------------------>JMSF005K21                                                                        
                            <------------------------------------------------rJMSF005K21  
 292 ----------------------------------------------------------------->JMSF035B21                                     
                   <--------------------------------------------------------rJMSF035B21  
 337  ---------------------------------------------------------------->JMFF015F15                                     
       <-----------------------------------------------------------------rJMFF015F15  
 372  --------------------------------->JMFF047G06                                                                    
                                       <-----------------------------rJMFF047G06  
 373 ------------------------------------------->JMFF047I12                                                           
                                   <---------------------------------rJMFF047I12  
 377 -------------------------------------------------------------->JMFF047D15                                        
          <---------------------------------------------------------rJMFF047D15  
 385  --------------------------------------------------->JMFF002D17                                                  
      <-------------------------------------------------------------rJMFF002D17  
 388  --------------------------------------------------------------->JMFF016D08                                      
      <-------------------------------------------------------------rJMFF016D08  
 393  --------------------------------------------------->JMFF021N13                                                  
      <------------------------------------------------------------rJMFF021N13  
 400 --------------------------------------------------------------->JMSF052F04                                       
     <------------------------------------------------------------rJMSF052F04  
 401  --------------------------------------------------->JMFF023I11                                                  
      <-----------------------------------------------------------rJMFF023I11  
 401  ---------------------------------------------------->JMFF040D19                                                 
      <-----------------------------------------------------------rJMFF040D19  
 401  -------------------------------------------------------------->JMFF017A19                                       
      <-----------------------------------------------------------rJMFF017A19  
 401 ------------------------------------------------------------->JMSF042F02                                         
     <-----------------------------------------------------------rJMSF042F02  
 410 --------------------------------------------------------------->JMSF036B03                                       
     <-----------------------------------------------------------rJMSF036B03  
 412 --------------------------------------------------------------->JMSF026G09                                       
     <----------------------------------------------------------rJMSF026G09  
 418 ---------------------------------->JMSF007L08                                                                    
     <----------------------------------------------------------rJMSF007L08  
 420 -------------------------------------------------------------->JMSF036I22                                        
     <----------------------------------------------------------rJMSF036I22  
 421 --------------------------------->JMSF007C02                                                                     
     <---------------------------------------------------------rJMSF007C02  
 421 -------------------------------------------------------------->JMSF031L21                                        
     <---------------------------------------------------------rJMSF031L21  
 421 -------------------------------------------------------------->JMSF052G18                                        
     <---------------------------------------------------------rJMSF052G18  
 442    ---------------------------->JMSF003J08                                                                       
        <-------------------------------------------------------rJMSF003J08

The following clones don't have the opposite end in this pair.

          ---------------------------------------------------------->JMFN034L02-                                      
       ------------------------------------------------------------->JMFN007K15-                                      
        ------------------------------------------------------------>JMFN036O02-                                      
        ------------------------------------------------------------>JMFN010D01-                                      
          --------------------------------------------------------->JMFN028I24-                                       
        ------------------------------------------------------------>JMFN017C07-                                      
       ------------------------------------------------------------->JMFS047B10-                                      
       ------------------------------------------------------------>JMFN032H05-                                       
       ------------------------------------------------------------>JMFN018L08-                                       
      <------------------------------------------------rJMSF023D08-                                                   
        --------------------------------------------------------->JMFN011E13-                                         
      <-------------------------------------------------------------rJMFF014A13-                                      
       ------------------------------------------------------------>JMFN029I04-                                       
     <----------------------------------------------------------rJMSF023D17*                                          
       ------------------------------------------------------------->JMFN007M20-                                      
         ----------------------------------------------------------->JMFN019L17-                                      
          ------------------------------------------------------>JMFN030C03-                                          
        ----------------------------------------------------------->JMFN034E07-                                       
       ------------------------------------------------------------>JMFS062C10-                                       
        ---------------------------------------------------------->JMFN020E14-                                        
        ----------------------------------------------------------->JMFN030C05-                                       
      <------------------------------------------------------------rJMFF035I24-                                       
          -------------------------------------------------------->JMFN030G18-                                        
                            <------------------------------------rJMSF005A02*                                         
        ----------------------------------------------------------->JMFN039D17-                                       
        ----------------------------------------------------------->JMFN038D16-                                       
       ---------------------------------------------------------->JMFN030B16-                                         
     ---------------------------->JMSF005C04-                                                                         
        ------------------------------------------------------->JMFN007F16-                                           
        ------------------------------------------------------->JMFN004C15-                                           
      -------------------------------------------------------------->JMFN038A08-                                      
        ------------------------------------------------------------>JMFN018A08-                                      
       -------------------------------------------------------->JMFN017H09-                                           
     <----------------------------------------------------------rJMSF036B13#                                          
        ----------------------------------------------------------->JMFN032K19-