clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF005K05 | Sequence | 520 | 002260 (11) | emb|CDP14458.1| | 5e-64 | unnamed protein product [Coffea canephora] | 779 | 002260 (11) | ref|XP_009611685.1| | 8e-63 | PREDICTED: uncharacterized protein At1g32220, chloroplastic-like isoform X1 [Ni |
JMFF046H21 | Sequence | 557 | 002260 (11) | emb|CDP14458.1| | 1e-72 | unnamed protein product [Coffea canephora] | 401 | 002260 (11) | ref|XP_006357060.1| | 4e-05 | PREDICTED: uncharacterized protein At1g32220, chloroplastic-like isoform X1 [So |
JMFN010I10 | Sequence | 624 | 002260 (11) | emb|CDP14458.1| | 1e-90 | unnamed protein product [Coffea canephora] | |||||
JMSF012K06 | Sequence | 511 | 002260 (11) | emb|CDP14458.1| | 6e-64 | unnamed protein product [Coffea canephora] | 725 | 002260 (11) | ref|XP_009611686.1| | 6e-99 | PREDICTED: uncharacterized protein At1g32220, chloroplastic-like isoform X2 [Ni |
JMSF025P11 | Sequence | 707 | 002260 (11) | emb|CDP14458.1| | 2e-99 | unnamed protein product [Coffea canephora] | 726 | 002260 (11) | ref|XP_009611685.1| | 2e-59 | PREDICTED: uncharacterized protein At1g32220, chloroplastic-like isoform X1 [Ni |
JMSF039O17 | Sequence | 683 | 002260 (11) | emb|CDP14458.1| | 2e-103 | unnamed protein product [Coffea canephora] | 791 | 002260 (11) | ref|XP_009611685.1| | 2e-77 | PREDICTED: uncharacterized protein At1g32220, chloroplastic-like isoform X1 [Ni |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig002260============================================1281 5 ------------------------------------------>JMFF046H21 <------------------------------rJMFF046H21 17 ------------------------------------------------------>JMSF025P11 <-------------------------------------------------------rJMSF025P11 55 ---------------------------------------->JMFF005K05 <-----------------------------------------------------------rJMFF005K05 98 ---------------------------------------------------->JMSF039O17 <-------------------------------------------------------------rJMSF039O17 270 --------------------------------------->JMSF012K06 <--------------------------------------------------------rJMSF012K06
The following clones don't have the opposite end in this pair.
------------------------------------------------>JMFN010I10-