clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF003G03 | Sequence | 526 | 003237 (10) | ref|XP_009776015.1| | 6e-10 | PREDICTED: transcription factor bHLH79 isoform X4 [Nicotiana sylvestris] | 764 | 003237 (10) | ref|XP_009593799.1| | 2e-72 | PREDICTED: transcription factor bHLH79 isoform X1 [Nicotiana tomentosiformis] |
JMFF003L02 | Sequence | 702 | 003237 (10) | ref|XP_009593799.1| | 2e-82 | PREDICTED: transcription factor bHLH79 isoform X1 [Nicotiana tomentosiformis] | |||||
JMFF003N19 | Sequence | 391 | 003237 (10) | 565 | 003237 (10) | ref|XP_009776013.1| | 5e-71 | PREDICTED: transcription factor bHLH79 isoform X2 [Nicotiana sylvestris] | |||
JMFF007O10 | Sequence | 547 | 003237 (10) | ref|XP_009776015.1| | 3e-04 | PREDICTED: transcription factor bHLH79 isoform X4 [Nicotiana sylvestris] | 710 | 003237 (10) | ref|XP_009776015.1| | 6e-04 | PREDICTED: transcription factor bHLH79 isoform X4 [Nicotiana sylvestris] |
JMFF037P04 | Sequence | 544 | 003237 (10) | ref|XP_009776015.1| | 6e-08 | PREDICTED: transcription factor bHLH79 isoform X4 [Nicotiana sylvestris] | 754 | 003237 (10) | ref|XP_009776012.1| | 2e-78 | PREDICTED: transcription factor bHLH79 isoform X1 [Nicotiana sylvestris] |
JMFN008K21 | Sequence | 640 | 003237 (10) | ref|XP_009776012.1| | 5e-91 | PREDICTED: transcription factor bHLH79 isoform X1 [Nicotiana sylvestris] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig003237============================================1146 1 ----------------------------------------------->JMFF037P04 <----------------------------------------------------------------rJMFF037P04 151 --------------------------------->JMFF003N19 <------------------------------------------------rJMFF003N19 310 --------------------------------------------->JMFF003G03 <------------------------------------------------rJMFF003G03 678 ---------------------------------------->JMFF007O10 <----------------------------------------rJMFF007O10
The following clones don't have the opposite end in this pair.
<------------------------------------------------------------rJMFF003L02- ------------------------------------------------------->JMFN008K21-