clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF003D20 | Sequence | 574 | 001330 (35) | ref|XP_004249062.1| | 1e-67 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | 582 | 001330 (35) | ref|XP_004249062.1| | 1e-67 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l |
JMFF003D21 | Sequence | 128 | 001330 (35) | ref|XP_002309161.1| | 5e-16 | macrophage migration inhibitory factor family protein [Populus trichocarpa] gb| | |||||
JMFF004B17 | Sequence | 598 | 001330 (35) | ref|XP_004249062.1| | 3e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | 564 | 001330 (35) | ref|XP_004249062.1| | 2e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l |
JMFF004O21 | Sequence | 442 | 001330 (35) | gb|AFK44196.1| | 3e-46 | unknown [Medicago truncatula] gb|AES86716.2| macrophage migration inhibition fac | 577 | 001330 (35) | gb|AFK44196.1| | 3e-46 | unknown [Medicago truncatula] gb|AES86716.2| macrophage migration inhibition fac |
JMFF006B04 | Sequence | 574 | 001330 (35) | ref|XP_004249062.1| | 2e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | 582 | 001330 (35) | ref|XP_004249062.1| | 3e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l |
JMFF009I06 | Sequence | 570 | 001330 (35) | ref|XP_004249062.1| | 2e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | 582 | 001330 (35) | ref|XP_004249062.1| | 3e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l |
JMFF010G08 | Sequence | 589 | 001330 (35) | ref|XP_004249062.1| | 3e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | 579 | 001330 (35) | ref|XP_004249062.1| | 3e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l |
JMFF011M18 | Sequence | 609 | 001330 (35) | ref|XP_004249062.1| | 4e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | 581 | 001330 (35) | ref|XP_004249062.1| | 3e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l |
JMFF024G12 | Sequence | 414 | 001330 (35) | ref|NP_001275218.1| | 5e-63 | macrophage migration inhibitory factor homolog [Solanum tuberosum] gb|AFW90560.1 | 582 | 001330 (35) | ref|XP_004249062.1| | 1e-67 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l |
JMFF026A19 | Sequence | 577 | 001330 (35) | ref|XP_004249062.1| | 1e-67 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | 582 | 001330 (35) | ref|XP_004249062.1| | 1e-67 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l |
JMFF046H08 | Sequence | 380 | 001330 (35) | ref|XP_006363614.1| | 5e-56 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum t | 427 | 001330 (35) | ref|XP_009597145.1| | 3e-41 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Nicotiana |
JMFF049E16 | Sequence | 608 | 001330 (35) | ref|XP_004249062.1| | 4e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | 515 | 001330 (35) | ref|XP_004249062.1| | 4e-41 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l |
JMFF051C23 | Sequence | 600 | 001330 (35) | ref|XP_004249062.1| | 3e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | 560 | 001330 (35) | ref|XP_004249062.1| | 1e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l |
JMFN019M20 | Sequence | 591 | 001330 (35) | ref|XP_004249062.1| | 3e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | |||||
JMFN025A01 | Sequence | 598 | 001330 (35) | ref|XP_004249062.1| | 3e-67 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | |||||
JMFN036K20 | Sequence | 551 | 001330 (35) | ref|XP_004249062.1| | 2e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | |||||
JMFN037H15 | Sequence | 517 | 001330 (35) | ref|XP_004249062.1| | 1e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | |||||
JMSF035F20 | Sequence | 611 | 001330 (35) | ref|XP_004249062.1| | 4e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | 553 | 001330 (35) | ref|XP_004249062.1| | 2e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l |
JMSF037B08 | Sequence | 611 | 001330 (35) | ref|XP_004249062.1| | 4e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l | 552 | 001330 (35) | ref|XP_004249062.1| | 2e-68 | PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Solanum l |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig001330============================================ 688 10 -------------------------------------------------------------------------------------->JMFF049E16 <--------------------------------------------------------------------------rJMFF049E16 95 -------------------------------------------------------------------------------------->JMFF051C23 <----------------------------------------------------------------------------rJMFF051C23 98 ------------------------------------------------------>JMFF046H08 <--------------------------------------------------------rJMFF046H08 104 ----------------------------------------------------------->JMFF024G12 <------------------------------------------------------------------------------------rJMFF024G12 104 ---------------------------------------------------------------------------------->JMFF009I06 <------------------------------------------------------------------------------------rJMFF009I06 104 ----------------------------------------------------------------------------------->JMFF003D20 <------------------------------------------------------------------------------------rJMFF003D20 104 ----------------------------------------------------------------------------------->JMFF006B04 <------------------------------------------------------------------------------------rJMFF006B04 104 ----------------------------------------------------------------------------------->JMFF026A19 <------------------------------------------------------------------------------------rJMFF026A19 105 ---------------------------------------------------------------------------------------->JMFF011M18 <------------------------------------------------------------------------------------rJMFF011M18 107 ------------------------------------------------------------------------------------->JMFF010G08 <-----------------------------------------------------------------------------------rJMFF010G08 112 --------------------------------------------------------------->JMFF004O21 <-----------------------------------------------------------------------------------rJMFF004O21 122 ------------------------------------------------------------------------------------->JMFF004B17 <---------------------------------------------------------------------------------rJMFF004B17 135 ---------------------------------------------------------------------------------------->JMSF035F20 <-------------------------------------------------------------------------------rJMSF035F20 136 ---------------------------------------------------------------------------------------->JMSF037B08 <-------------------------------------------------------------------------------rJMSF037B08
The following clones don't have the opposite end in this pair.
--------------------------------------------------------------------------->JMFF051P20# <-----------------rJMFF003D21- ----------------------------------------------------------------------------------->JMFN025A01- ------------------------------------------------------------------------------->JMFN036K20- <--------------------------------------------------------------------------------rJMSF016D24* -------------------------------------------------------------------------->JMFN037H15- ------------------------------------------------------------------------------------->JMFN019M20-