| clone | seq. | 5'-sequence | 3'-sequence | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
| JMFF006D13 | Sequence | 496 | 012423 (27) | gb|KCW51606.1| | 2e-66 | hypothetical protein EUGRSUZ_J01096 [Eucalyptus grandis] | 665 | 012423 (27) | ref|XP_004143800.1| | 5e-121 | PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like [Cucumis sati |
| JMFF013C23 | Sequence | 546 | 012423 (27) | gb|KCW51606.1| | 4e-80 | hypothetical protein EUGRSUZ_J01096 [Eucalyptus grandis] | 693 | 012423 (27) | ref|XP_004143800.1| | 3e-136 | PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like [Cucumis sati |
| JMFF021P04 | Sequence | 514 | 012423 (27) | gb|KCW51606.1| | 7e-67 | hypothetical protein EUGRSUZ_J01096 [Eucalyptus grandis] | 629 | 012423 (27) | ref|XP_004143800.1| | 5e-122 | PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like [Cucumis sati |
| JMFF023B01 | Sequence | 616 | 012423 (27) | ref|XP_004239673.1| | 6e-90 | PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Solanum lycopersi | |||||
| JMFF025N05 | Sequence | 691 | 012423 (27) | ref|XP_004143800.1| | 3e-120 | PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like [Cucumis sati | |||||
| JMFF026E09 | Sequence | 569 | 012423 (27) | ref|XP_002275552.1| | 5e-80 | PREDICTED: chlorophyll a-b binding protein 6, chloroplastic [Vitis vinifera] em | 736 | 012423 (27) | ref|XP_004143800.1| | 3e-136 | PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like [Cucumis sati |
| JMFF031G19 | Sequence | 520 | 012423 (27) | gb|KCW51606.1| | 1e-67 | hypothetical protein EUGRSUZ_J01096 [Eucalyptus grandis] | |||||
| JMFF043M17 | Sequence | 615 | 012423 (27) | ref|XP_002275552.1| | 5e-90 | PREDICTED: chlorophyll a-b binding protein 6, chloroplastic [Vitis vinifera] em | 656 | 012423 (27) | ref|XP_008453995.1| | 1e-76 | PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic isoform X1 [Cucumi |
| JMFN007O05 | Sequence | 633 | 012423 (27) | ref|XP_006345801.1| | 2e-96 | PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like [Solanum tube | |||||
| JMFN008N05 | Sequence | 642 | 012423 (27) | gb|AAA34140.1| | 1e-98 | chlorophyll a/b-binding protein [Solanum lycopersicum] prf||1402358A photosystem | |||||
| JMFN042K20 | Sequence | 603 | 012423 (27) | ref|XP_004239673.1| | 2e-98 | PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Solanum lycopersi | |||||
| JMSF006F22 | Sequence | 368 | 012423 (27) | gb|KCW51606.1| | 8e-43 | hypothetical protein EUGRSUZ_J01096 [Eucalyptus grandis] | 423 | 012423 (27) | ref|XP_008453995.1| | 5e-67 | PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic isoform X1 [Cucumi |
| JMSF015J17 | Sequence | 463 | 012423 (27) | ref|XP_004515998.1| | 6e-59 | PREDICTED: chlorophyll a-b binding protein 6, chloroplastic-like isoform X2 [Ci | 758 | 012423 (27) | ref|XP_008453995.1| | 5e-139 | PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic isoform X1 [Cucumi |
| JMSF023H17 | Sequence | 664 | 012423 (27) | gb|AAA34140.1| | 4e-98 | chlorophyll a/b-binding protein [Solanum lycopersicum] prf||1402358A photosystem | 743 | 012423 (27) | ref|XP_008453995.1| | 7e-140 | PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic isoform X1 [Cucumi |
| JMSF041F14 | Sequence | 738 | 012423 (27) | gb|AAA34140.1| | 2e-123 | chlorophyll a/b-binding protein [Solanum lycopersicum] prf||1402358A photosystem | |||||
Explanatory notes: "*" The opposite end is in another contig. "**" The opposite end is in same contig. "#" The opposite end is singlet. "-" The opposite end has no seqence.
SCORE============================================Contig012423============================================1095 5 ------------------------------------------------------->JMFF043M17 <-----------------------------------------------------------rJMFF043M17 184 -------------------------------------------->JMFF006D13 <------------------------------------------------------------rJMFF006D13 185 --------------------------------------------------->JMFF026E09 <------------------------------------------------------------------rJMFF026E09 206 ---------------------------------------------->JMFF021P04 <---------------------------------------------------------rJMFF021P04 206 ------------------------------------------------------------>JMSF023H17 <-------------------------------------------------------------------rJMSF023H17 212 ----------------------------------------->JMSF015J17 <--------------------------------------------------------------------rJMSF015J17 247 --------------------------------->JMSF006F22 <--------------------------------------rJMSF006F22 261 ------------------------------------------------->JMFF013C23 <-------------------------------------------------------------rJMFF013C23
The following clones don't have the opposite end in this pair.
--------------------------------------------------------->JMFN007O05- <-------------------------------------------------------rJMFF023B01- ------------------------------------------------------------------>JMSF041F14- <---------------------------------------------------JMFN042K20- ------------------------>JMSF002H06* ----------------------------------------------->JMFF031G19- <--------------------------------------------------------------------rJMSF027G10* ---------------------------------------------------------->JMFN008N05- <-------------------------------------------------------------------rJMSF021M16* <--------------------------------------------------------------rJMFF025N05- <------------------------------------------------------------rJMSF052P05*