clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF042G20 | Sequence | 633 | 007098 (12) | ref|XP_009601394.1| | 4e-25 | PREDICTED: uncharacterized protein LOC104096687 isoform X2 [Nicotiana tomentosi | 620 | 007098 (12) | ref|XP_009804707.1| | 9e-98 | PREDICTED: heme-binding-like protein At3g10130, chloroplastic isoform X2 [Nicot |
JMSF019D03 | Sequence | 321 | 007098 (12) | ref|XP_009601394.1| | 4e-06 | PREDICTED: uncharacterized protein LOC104096687 isoform X2 [Nicotiana tomentosi | 642 | 007098 (12) | ref|XP_009804707.1| | 1e-103 | PREDICTED: heme-binding-like protein At3g10130, chloroplastic isoform X2 [Nicot |
JMSF020F09 | Sequence | 682 | 007098 (12) | ref|XP_009601394.1| | 7e-73 | PREDICTED: uncharacterized protein LOC104096687 isoform X2 [Nicotiana tomentosi | 749 | 007098 (12) | ref|XP_009804706.1| | 1e-133 | PREDICTED: uncharacterized protein LOC104249893 isoform X1 [Nicotiana sylvestri |
JMSF028J08 | Sequence | 641 | 007098 (12) | ref|XP_009601394.1| | 8e-69 | PREDICTED: uncharacterized protein LOC104096687 isoform X2 [Nicotiana tomentosi | 771 | 007098 (12) | ref|XP_009804706.1| | 3e-139 | PREDICTED: uncharacterized protein LOC104249893 isoform X1 [Nicotiana sylvestri |
JMSF033F02 | Sequence | 677 | 007098 (12) | ref|XP_009601394.1| | 8e-74 | PREDICTED: uncharacterized protein LOC104096687 isoform X2 [Nicotiana tomentosi | 693 | 007098 (12) | ref|XP_009804707.1| | 7e-120 | PREDICTED: heme-binding-like protein At3g10130, chloroplastic isoform X2 [Nicot |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig007098============================================1416 66 -------------------------------------------->JMFF042G20 <-----------------------------------rJMFF042G20 173 ----------------------------------------------->JMSF020F09 <----------------------------------------------------rJMSF020F09 177 ----------------------------------------------->JMSF033F02 <-----------------------------------------------rJMSF033F02 186 -------------------------------------------->JMSF028J08 <------------------------------------------------------rJMSF028J08 276 ---------------------->JMSF019D03 <--------------------------------------------rJMSF019D03
The following clones don't have the opposite end in this pair.
<--------------------------------------------rJMSF025L17* ----------------------------------------------->JMSF046B02*