clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF004C09 | Sequence | 578 | 011686 (10) | ref|XP_009803380.1| | 3e-65 | PREDICTED: photosystem II reaction center Psb28 protein [Nicotiana sylvestris] | 611 | 011686 (10) | ref|XP_009803380.1| | 5e-65 | PREDICTED: photosystem II reaction center Psb28 protein [Nicotiana sylvestris] |
JMFF027O03 | Sequence | 602 | 011686 (10) | ref|XP_009803380.1| | 5e-65 | PREDICTED: photosystem II reaction center Psb28 protein [Nicotiana sylvestris] | 610 | 011686 (10) | ref|XP_009803380.1| | 5e-65 | PREDICTED: photosystem II reaction center Psb28 protein [Nicotiana sylvestris] |
JMFF034I10 | Sequence | 596 | 011686 (10) | ref|XP_009803380.1| | 1e-90 | PREDICTED: photosystem II reaction center Psb28 protein [Nicotiana sylvestris] | 645 | 011686 (10) | ref|XP_009803380.1| | 3e-90 | PREDICTED: photosystem II reaction center Psb28 protein [Nicotiana sylvestris] |
JMFN012A16 | Sequence | 592 | 011686 (10) | ref|XP_009616744.1| | 4e-85 | PREDICTED: photosystem II reaction center Psb28 protein {ECO:0000255|HAMAP-Rule: | |||||
JMFN025F20 | Sequence | 618 | 011686 (10) | ref|XP_009803380.1| | 2e-90 | PREDICTED: photosystem II reaction center Psb28 protein [Nicotiana sylvestris] | |||||
JMSF027I16 | Sequence | 627 | 011686 (10) | ref|XP_009616744.1| | 5e-90 | PREDICTED: photosystem II reaction center Psb28 protein {ECO:0000255|HAMAP-Rule: | 655 | 011686 (10) | ref|XP_009616744.1| | 8e-90 | PREDICTED: photosystem II reaction center Psb28 protein {ECO:0000255|HAMAP-Rule: |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig011686============================================ 692 38 ----------------------------------------------------------------------------------------->JMSF027I16 <----------------------------------------------------------------------------------------------rJMSF027I16 48 ------------------------------------------------------------------------------------->JMFF034I10 <--------------------------------------------------------------------------------------------rJMFF034I10 85 ----------------------------------------------------------------------------------->JMFF004C09 <---------------------------------------------------------------------------------------rJMFF004C09 85 -------------------------------------------------------------------------------------->JMFF027O03 <---------------------------------------------------------------------------------------rJMFF027O03
The following clones don't have the opposite end in this pair.
---------------------------------------------------------------------------------------->JMFN025F20- ------------------------------------------------------------------------------------->JMFN012A16-