List of clones in pair P012225.

cloneseq.5'-sequence3'-sequence
lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001L01Sequence501005820 (37)ref|XP_009591491.1|2e-76PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1| 631005820 (37)ref|XP_009591491.1|3e-90PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFF011E03Sequence710005820 (37)ref|XP_009591491.1|1e-91PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFF022M20Sequence477005820 (37)ref|XP_009591491.1|2e-74PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1| 738005820 (37)ref|XP_009591491.1|1e-91PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFF028L13Sequence497005820 (37)ref|XP_009591491.1|2e-74PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1| 645005820 (37)ref|XP_009591491.1|4e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFF037N04Sequence517005820 (37)ref|XP_009591491.1|8e-89PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1| 694005820 (37)ref|XP_009591491.1|3e-89PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFF043E01Sequence634005820 (37)ref|XP_009591491.1|4e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1| 628005820 (37)ref|XP_009624361.1|2e-73PREDICTED: SKP1-like protein 1A isoform X1 [Nicotiana tomentosiformis]
JMFN004E24Sequence617005820 (37)ref|XP_009591491.1|2e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN006D17Sequence627005820 (37)ref|XP_009591491.1|1e-90PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN007G06Sequence625005820 (37)ref|XP_009591491.1|3e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN007I20Sequence623005820 (37)ref|XP_009591491.1|2e-91PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN009H01Sequence517005820 (37)ref|XP_009624361.1|3e-60PREDICTED: SKP1-like protein 1A isoform X1 [Nicotiana tomentosiformis]
JMFN013C23Sequence622005820 (37)ref|XP_009591491.1|3e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN013P03Sequence627005820 (37)ref|XP_009591491.1|3e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN015H22Sequence600005820 (37)ref|XP_009591491.1|6e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN016F07Sequence606005820 (37)ref|XP_009591491.1|2e-91PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN017E13Sequence616005820 (37)ref|XP_009591491.1|4e-91PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN017M20Sequence627005820 (37)ref|XP_009591491.1|6e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN025C01Sequence616005820 (37)ref|XP_009591491.1|2e-91PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN025C05Sequence598005820 (37)ref|XP_009591491.1|2e-91PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN029C13Sequence622005820 (37)ref|XP_009591491.1|8e-79PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN031D13Sequence612005820 (37)ref|XP_009779583.1|9e-75PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris] gb|AAC63273.1| SKP1-like
JMFN031P01Sequence588005820 (37)ref|XP_009591491.1|2e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN032E23Sequence642005820 (37)ref|XP_009591491.1|4e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN032K09Sequence649005820 (37)ref|XP_009591491.1|3e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN034C20Sequence632005820 (37)ref|XP_009591491.1|4e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFN035M09Sequence619005820 (37)ref|XP_009591491.1|3e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMFS135F10Sequence625005820 (37)ref|XP_009591491.1|3e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMSF001K07Sequence227005820 (37)ref|XP_009783395.1|3e-32PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris]687005820 (37)ref|XP_009591491.1|7e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|
JMSF006M11Sequence271005820 (37)ref|XP_009783395.1|6e-32PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris]
JMSF047C11Sequence661005820 (37)ref|XP_009591491.1|5e-92PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1| 729005820 (37)ref|XP_009591491.1|1e-91PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis] ref|XP_009782768.1|

Contig 5820 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.

SCORE============================================Contig005820============================================ 836         
  25    --------------------------------------------------------------------------->JMFF043E01                        
                              <--------------------------------------------------------------------------rJMFF043E01  
  80    -------------------------------------------------------->JMFF022M20                                           
          <---------------------------------------------------------------------------------------rJMFF022M20  
  87   --------------------------------------------------------->JMFF001L01                                           
                     <--------------------------------------------------------------------------rJMFF001L01  
  91   --------------------------------------------------------->JMFF028L13                                           
                   <----------------------------------------------------------------------------rJMFF028L13  
  96      ------------------------------------------------------------->JMFF037N04                                    
               <----------------------------------------------------------------------------------rJMFF037N04  
 124   ---------------------------------------------------------------------------->JMSF047C11                        
     <--------------------------------------------------------------------------------------rJMSF047C11  
 151           -------------------------->JMSF001K07                                                                  
               <---------------------------------------------------------------------------------rJMSF001K07

The following clones don't have the opposite end in this pair.

        ------------------------------------------------------------------------->JMFN013C23-                         
            ----------------------------------------------------------------------->JMFN025C05-                       
             <------------------------------------------------------------------------------------rJMFF011E03-        
        ----------------------------------------------------------------------->JMFN015H22-                           
                           ---------------------------------------------------------------------->JMFN029C13-         
                  ------------------------------------------------------------------------->JMFN025C01-               
          ------------------------------->JMSF006M11-                                                                 
                     -------------------------------------------------------------------------->JMFN006D17-           
           -------------------------------------------------------------------------->JMFN007G06-                     
          ---------------------------------------------------------------------------->JMFN032E23-                    
          ------------------------------------------------------------------------->JMFN035M09-                       
       -------------------------------------------------------------------------->JMFN017M20-                         
             -------------------------------------------------------------------------->JMFS135F10-                   
        -------------------------------------------------------------------------->JMFN013P03-                        
                   ----------------------------------------------------------------------------->JMFN032K09-          
             --------------------------------------------------------------------->JMFN031P01-                        
        --------------------------------------------------------------------------->JMFN034C20-                       
                             ------------------------------------------------------------------------>JMFN031D13-     
             ------------------------------------------------------------------------>JMFN017E13-                     
                                    ------------------------------------------------------------->JMFN009H01-         
                 ------------------------------------------------------------------------->JMFN004E24-                
        -------------------------------------------------------------------------->JMFN007I20-                        
             ----------------------------------------------------------------------->JMFN016F07-