clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF012E04 | Sequence | 547 | 005066 (14) | ref|XP_009766233.1| | 6e-79 | PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic [Nicotiana sylvestris] | 801 | 005066 (14) | ref|XP_011077796.1| | 4e-128 | PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Sesamum indicum] |
JMFF020K18 | Sequence | 528 | 005066 (14) | ref|XP_009766233.1| | 1e-61 | PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic [Nicotiana sylvestris] | 771 | 005066 (14) | ref|XP_011077796.1| | 2e-125 | PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Sesamum indicum] |
JMFN020I03 | Sequence | 614 | 005066 (14) | ref|XP_009611421.1| | 4e-99 | PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Nicotiana tomentosifor | |||||
JMFN040H23 | Sequence | 612 | 005066 (14) | ref|XP_011077796.1| | 8e-89 | PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Sesamum indicum] | |||||
JMSF009J02 | Sequence | 355 | 005066 (14) | ref|XP_009611421.1| | 5e-28 | PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Nicotiana tomentosifor | 774 | 005066 (14) | ref|XP_007027930.1| | 5e-140 | 2-cysteine peroxiredoxin B [Theobroma cacao] gb|EOY08432.1| 2-cysteine peroxired |
JMSF014J05 | Sequence | 593 | 005066 (14) | ref|XP_009766233.1| | 8e-77 | PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic [Nicotiana sylvestris] | 794 | 005066 (14) | ref|XP_007027930.1| | 5e-142 | 2-cysteine peroxiredoxin B [Theobroma cacao] gb|EOY08432.1| 2-cysteine peroxired |
JMSF016J05 | Sequence | 616 | 005066 (14) | ref|XP_009611421.1| | 3e-83 | PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Nicotiana tomentosifor | 762 | 005066 (14) | ref|XP_011077796.1| | 7e-137 | PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Sesamum indicum] |
JMSF020M18 | Sequence | 640 | 005066 (14) | ref|XP_009611421.1| | 7e-84 | PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Nicotiana tomentosifor | 732 | 005066 (14) | ref|XP_011077796.1| | 1e-130 | PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Sesamum indicum] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig005066============================================1198 36 ------------------------------------------->JMFF020K18 <---------------------------------------------------------------rJMFF020K18 76 --------------------------------------------->JMFF012E04 <------------------------------------------------------------------rJMFF012E04 88 ---------------------------------------------------->JMSF020M18 <-----------------------------------------------------------rJMSF020M18 93 -------------------------------------------------->JMSF016J05 <---------------------------------------------------------------rJMSF016J05 95 ------------------------------------------------>JMSF014J05 <-----------------------------------------------------------------rJMSF014J05 138 ----------------------------->JMSF009J02 <----------------------------------------------------------------rJMSF009J02
The following clones don't have the opposite end in this pair.
<--------------------------------JMFN040H23- -------------------------------------------------->JMFN020I03-