clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF002G17 | Sequence | 491 | 002321 (9) | emb|CDP14130.1| | 2e-98 | unnamed protein product [Coffea canephora] | 703 | 002321 (9) | ref|XP_009597032.1| | 6e-101 | PREDICTED: transcription initiation factor IIB-2-like [Nicotiana tomentosiformi |
JMFF004H11 | Sequence | 222 | 002321 (9) | 759 | 002321 (9) | ref|XP_009597032.1| | 2e-121 | PREDICTED: transcription initiation factor IIB-2-like [Nicotiana tomentosiformi | |||
JMFF006K20 | Sequence | 280 | 002321 (9) | 757 | 002321 (9) | ref|XP_009597032.1| | 7e-89 | PREDICTED: transcription initiation factor IIB-2-like [Nicotiana tomentosiformi | |||
JMFN036J04 | Sequence | 607 | 002321 (9) | ref|XP_006351306.1| | 1e-64 | PREDICTED: transcription initiation factor IIB-2-like [Solanum tuberosum] | |||||
JMSF032B22 | Sequence | 602 | 002321 (9) | ref|XP_006351306.1| | 2e-60 | PREDICTED: transcription initiation factor IIB-2-like [Solanum tuberosum] | 697 | 002321 (9) | ref|XP_009597032.1| | 1e-111 | PREDICTED: transcription initiation factor IIB-2-like [Nicotiana tomentosiformi |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig002321============================================1401 7 ------------------->JMFF006K20 <-----------------------------------------------------rJMFF006K20 46 -------------->JMFF004H11 <-----------------------------------------------------rJMFF004H11 71 ----------------------------------------->JMSF032B22 <------------------------------------------------rJMSF032B22 610 ---------------------------------->JMFF002G17 <------------------------------------------------rJMFF002G17
The following clones don't have the opposite end in this pair.
------------------------------------------>JMFN036J04-