clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF016J01 | Sequence | 604 | 007495 (15) | dbj|BAA01974.1| | 2e-65 | chloroplast elongation factor TuA (EF-TuA) [Nicotiana sylvestris] | 774 | 007495 (15) | ref|XP_010102969.1| | 7e-127 | Elongation factor Tu [Morus notabilis] gb|EXB94487.1| Elongation factor Tu [Moru |
JMFF018F08 | Sequence | 578 | 007495 (15) | dbj|BAA01974.1| | 5e-56 | chloroplast elongation factor TuA (EF-TuA) [Nicotiana sylvestris] | 727 | 007495 (15) | ref|XP_010102969.1| | 2e-117 | Elongation factor Tu [Morus notabilis] gb|EXB94487.1| Elongation factor Tu [Moru |
JMFF022M19 | Sequence | 759 | 007495 (15) | ref|XP_010102969.1| | 5e-144 | Elongation factor Tu [Morus notabilis] gb|EXB94487.1| Elongation factor Tu [Moru | |||||
JMFF025M03 | Sequence | 479 | 007495 (15) | dbj|BAA01974.1| | 3e-33 | chloroplast elongation factor TuA (EF-TuA) [Nicotiana sylvestris] | 773 | 007495 (15) | ref|XP_010102969.1| | 1e-131 | Elongation factor Tu [Morus notabilis] gb|EXB94487.1| Elongation factor Tu [Moru |
JMFF041L14 | Sequence | 655 | 007495 (15) | dbj|BAA01974.1| | 4e-78 | chloroplast elongation factor TuA (EF-TuA) [Nicotiana sylvestris] | 554 | 007495 (15) | ref|XP_008379193.1| | 2e-53 | PREDICTED: elongation factor TuA, chloroplastic-like [Malus domestica] |
JMFF050M24 | Sequence | 598 | 007495 (15) | dbj|BAA01974.1| | 3e-63 | chloroplast elongation factor TuA (EF-TuA) [Nicotiana sylvestris] | 561 | 007495 (15) | emb|CDX98668.1| | 3e-88 | BnaA03g44530D [Brassica napus] |
JMFN029K12 | Sequence | 505 | 007495 (15) | gb|AFK35632.1| | 2e-68 | unknown [Lotus japonicus] | |||||
JMFS147C03 | Sequence | 620 | 007495 (15) | dbj|BAA01974.1| | 4e-92 | chloroplast elongation factor TuA (EF-TuA) [Nicotiana sylvestris] | |||||
JMSF022D19 | Sequence | 641 | 007495 (15) | ref|XP_010529344.1| | 4e-90 | PREDICTED: elongation factor Tu, chloroplastic-like [Tarenaya hassleriana] | 769 | 007495 (15) | ref|XP_010529344.1| | 4e-159 | PREDICTED: elongation factor Tu, chloroplastic-like [Tarenaya hassleriana] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig007495============================================1811 5 ----------------------------------->JMFF041L14 <------------------------------rJMFF041L14 110 ------------------------------->JMFF018F08 <---------------------------------------rJMFF018F08 110 -------------------------------->JMFF016J01 <-----------------------------------------rJMFF016J01 115 ------------------------->JMFF025M03 <-----------------------------------------rJMFF025M03 138 -------------------------------->JMFF050M24 <------------------------------rJMFF050M24 883 ---------------------------------->JMSF022D19 <------------------------------------------rJMSF022D19
The following clones don't have the opposite end in this pair.
<-----------------------------------------rJMFF022M19- --------------------------------->JMFS147C03- --------------------------->JMFN029K12-