clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF006A23 | Sequence | 604 | 011374 (22) | ref|XP_008644390.1| | 2e-96 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] | 614 | 011374 (22) | ref|XP_008644390.1| | 3e-96 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] |
JMFF015F07 | Sequence | 611 | 011374 (22) | ref|XP_008644390.1| | 1e-96 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] | 619 | 011374 (22) | ref|XP_008644390.1| | 1e-96 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] |
JMFF025I11 | Sequence | 614 | 011374 (22) | ref|XP_008644390.1| | 2e-97 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] | 626 | 011374 (22) | ref|XP_008644390.1| | 3e-97 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] |
JMFF046D11 | Sequence | 550 | 011374 (22) | ref|XP_008644390.1| | 2e-95 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] | 462 | 011374 (22) | sp|Q9M5Z9.1|RS23_EUPES | 3e-59 | RecName: Full=40S ribosomal protein S23 [Euphorbia esula] gb|AAF26742.1|AF220539 |
JMFN017J01 | Sequence | 598 | 011374 (22) | ref|XP_008644390.1| | 2e-97 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] | |||||
JMFN025M20 | Sequence | 614 | 011374 (22) | ref|XP_008644390.1| | 1e-96 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] | |||||
JMFN042E13 | Sequence | 612 | 011374 (22) | ref|XP_008644390.1| | 2e-97 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] | |||||
JMFN043G24 | Sequence | 629 | 011374 (22) | ref|XP_008644390.1| | 3e-97 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] | |||||
JMFN046L05 | Sequence | 539 | 011374 (22) | ref|XP_008644390.1| | 1e-97 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] | |||||
JMSF007P08 | Sequence | 235 | 011374 (22) | emb|CBI32689.3| | 5e-28 | unnamed protein product [Vitis vinifera] | 607 | 011374 (22) | ref|XP_008644390.1| | 2e-97 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] |
JMSF011P20 | Sequence | 231 | 011374 (22) | emb|CBI32689.3| | 5e-28 | unnamed protein product [Vitis vinifera] | 605 | 011374 (22) | ref|XP_008644390.1| | 2e-97 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] |
JMSF047L08 | Sequence | 652 | 011374 (22) | ref|XP_008644390.1| | 4e-97 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] | 597 | 011374 (22) | ref|XP_008644390.1| | 2e-97 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] |
JMSF050I08 | Sequence | 678 | 011374 (22) | ref|XP_008644390.1| | 5e-97 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] | 627 | 011374 (22) | ref|XP_008644390.1| | 3e-97 | PREDICTED: 40S ribosomal protein S23-like [Zea mays] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig011374============================================ 660 33 ---------------------------------------------------------------------------->JMSF050I08 <----------------------------------------------------------------------------------------------rJMSF050I08 38 ------------------------------------------------------------------------------------------->JMFF025I11 <---------------------------------------------------------------------------------------------rJMFF025I11 41 -------------------------------------------------------------------------------------------->JMFF015F07 <---------------------------------------------------------------------------------------------rJMFF015F07 46 ------------------------------------------------------------------------------------------->JMFF006A23 <--------------------------------------------------------------------------------------------rJMFF006A23 55 ---------------------------------->JMSF007P08 <-------------------------------------------------------------------------------------------rJMSF007P08 58 ---------------------------------->JMSF011P20 <------------------------------------------------------------------------------------------rJMSF011P20 67 -------------------------------------------------------------------------->JMSF047L08 <-----------------------------------------------------------------------------------------rJMSF047L08 151 --------------------------------------------------------------------------------->JMFF046D11 <-------------------------------------------rJMFF046D11
The following clones don't have the opposite end in this pair.
---------------------------------------------------------------------------------------------->JMFN043G24- -------------------------------------------------------------------------------------------->JMFN025M20- ------------------------------------------------------------------------------------------>JMFN017J01- -------------------------------------------------------------------------------------------->JMFN042E13- <---------------------------------------------------------------------------------------------rJMSF036H08* --------------------------------------------------------------------------------->JMFN046L05-