List of clones in pair P011458.

cloneseq.5'-sequence3'-sequence
lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011A10Sequence531000123 (28)ref|XP_009615222.1|1e-42PREDICTED: rapid alkalinization factor-like [Nicotiana tomentosiformis]586000123 (28)ref|XP_004229189.1|3e-40PREDICTED: rapid alkalinization factor-like [Solanum lycopersicum]
JMFF014G21Sequence529000123 (28)ref|XP_009615222.1|3e-42PREDICTED: rapid alkalinization factor-like [Nicotiana tomentosiformis]734000123 (28)ref|XP_004229189.1|3e-39PREDICTED: rapid alkalinization factor-like [Solanum lycopersicum]
JMFF022I22Sequence508000123 (28)ref|XP_009615222.1|8e-43PREDICTED: rapid alkalinization factor-like [Nicotiana tomentosiformis]608000123 (28)ref|XP_004229189.1|4e-40PREDICTED: rapid alkalinization factor-like [Solanum lycopersicum]
JMFF025F23Sequence532000123 (28)ref|XP_009615222.1|1e-42PREDICTED: rapid alkalinization factor-like [Nicotiana tomentosiformis]614000123 (28)ref|XP_004229189.1|2e-39PREDICTED: rapid alkalinization factor-like [Solanum lycopersicum]
JMFF042E23Sequence654000123 (28)ref|XP_009615222.1|4e-42PREDICTED: rapid alkalinization factor-like [Nicotiana tomentosiformis]613000123 (28)ref|XP_009781864.1|2e-42PREDICTED: rapid alkalinization factor-like [Nicotiana sylvestris]
JMFN003B07Sequence590000123 (28)ref|XP_006356972.1|5e-41PREDICTED: rapid alkalinization factor-like [Solanum tuberosum]
JMFN005D23Sequence642000123 (28)ref|XP_009781864.1|3e-42PREDICTED: rapid alkalinization factor-like [Nicotiana sylvestris]
JMFN014A10Sequence595000123 (28)ref|XP_009781864.1|2e-42PREDICTED: rapid alkalinization factor-like [Nicotiana sylvestris]
JMFN014K10Sequence618000123 (28)ref|XP_009781864.1|2e-42PREDICTED: rapid alkalinization factor-like [Nicotiana sylvestris]
JMFN016L15Sequence584000123 (28)ref|XP_006356972.1|2e-42PREDICTED: rapid alkalinization factor-like [Solanum tuberosum]
JMFN017K08Sequence596000123 (28)ref|XP_006356972.1|2e-42PREDICTED: rapid alkalinization factor-like [Solanum tuberosum]
JMFN018E18Sequence426000123 (28)ref|XP_009781864.1|5e-34PREDICTED: rapid alkalinization factor-like [Nicotiana sylvestris]
JMFN020B13Sequence596000123 (28)ref|XP_004229189.1|3e-41PREDICTED: rapid alkalinization factor-like [Solanum lycopersicum]
JMFN020F03Sequence591000123 (28)ref|XP_006356972.1|2e-42PREDICTED: rapid alkalinization factor-like [Solanum tuberosum]
JMFN020J01Sequence292000123 (28)ref|XP_009781864.1|9e-29PREDICTED: rapid alkalinization factor-like [Nicotiana sylvestris]
JMFN031P17Sequence613000123 (28)ref|XP_009781864.1|3e-42PREDICTED: rapid alkalinization factor-like [Nicotiana sylvestris]
JMFN033L24Sequence656000123 (28)ref|XP_009781864.1|4e-42PREDICTED: rapid alkalinization factor-like [Nicotiana sylvestris]
JMFN034J05Sequence616000123 (28)ref|XP_009781864.1|3e-42PREDICTED: rapid alkalinization factor-like [Nicotiana sylvestris]
JMFN034O06Sequence180000123 (28)
JMFN037D14Sequence574000123 (28)ref|XP_009781864.1|1e-42PREDICTED: rapid alkalinization factor-like [Nicotiana sylvestris]
JMFN037O09Sequence588000123 (28)ref|XP_009781864.1|2e-42PREDICTED: rapid alkalinization factor-like [Nicotiana sylvestris]
JMFN042M06Sequence579000123 (28)ref|XP_009781864.1|2e-42PREDICTED: rapid alkalinization factor-like [Nicotiana sylvestris]
JMFN045P15Sequence624000123 (28)ref|XP_009781864.1|3e-42PREDICTED: rapid alkalinization factor-like [Nicotiana sylvestris]

Contig 123 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.

SCORE============================================Contig000123============================================ 769         
   1 -------------------------------------------------------------------->JMFF014G21                                  
         <-----------------------------------------------------------------------------------------------rJMFF014G21  
 122 ----------------------------------------------------------------------------------->JMFF042E23                   
         <-------------------------------------------------------------------------------rJMFF042E23  
 153 -------------------------------------------------------------------->JMFF025F23                                  
     <-------------------------------------------------------------------------------rJMFF025F23  
 159 ----------------------------------------------------------------->JMFF022I22                                     
     <------------------------------------------------------------------------------rJMFF022I22  
 181 -------------------------------------------------------------------->JMFF011A10                                  
     <---------------------------------------------------------------------------rJMFF011A10

The following clones don't have the opposite end in this pair.

         -------------------------------------------------------------------------------->JMFN045P15-                 
         -------------------------------------------------------------------------->JMFN037D14-                       
       ---------------------->JMFN034O06-                                                                             
       ----------------------------------------------------------------------------->JMFN014A10-                      
       ------------------------------------------------------------------------------->JMFN034J05-                    
                ---------------------------------------------------------------------->JMFN020F03-                    
        --------------------------------------------------------------------------->JMFN037O09-                       
                                        ------------------------------------->JMFN020J01-                             
         ----------------------------------------------------------------------------------->JMFN005D23-              
                                   ------------------------------------------------>JMFN018E18-                       
       --------------------------------------------------------------------------->JMFN016L15-                        
       ------------------------------------------------------------------------------->JMFN031P17-                    
       ------------------------------------------------------------------------------------->JMFN033L24-              
       ----------------------------------------------------------------------------->JMFN017K08-                      
          ---------------------------------------------------------------------------->JMFN020B13-                    
         -------------------------------------------------------------------------------->JMFN014K10-                 
         ---------------------------------------------------------------------------->JMFN003B07-                     
         <---------------------------------------------------------------------------JMFN042M06-