List of clones in pair P011196.

cloneseq.5'-sequence3'-sequence
lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006I10Sequence531009558 (40)ref|XP_011086789.1|7e-81PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]705009558 (40)ref|XP_009787153.1|1e-129PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris
JMFF007O23Sequence561009558 (40)ref|XP_011086789.1|8e-91PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]524009558 (40)ref|XP_009787153.1|1e-90PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris
JMFF017J18Sequence592009558 (40)ref|XP_011086789.1|4e-97PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]774009558 (40)ref|XP_010044808.1|2e-148PREDICTED: chlorophyll a-b binding protein 7, chloroplastic [Eucalyptus grandis
JMFF022L08Sequence727009558 (40)ref|XP_009787153.1|3e-137PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris
JMFF023C11Sequence481009558 (40)ref|XP_011086789.1|2e-66PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]757009558 (40)ref|XP_011086789.1|3e-151PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]
JMFF028B03Sequence534009558 (40)ref|XP_011086789.1|4e-82PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]556009558 (40)ref|XP_009787153.1|3e-85PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris
JMFF028B04Sequence535009558 (40)ref|XP_011086789.1|1e-81PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]527009558 (40)ref|XP_009787153.1|9e-78PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris
JMFF048E17Sequence478009558 (40)ref|XP_011086789.1|4e-69PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]286009558 (40)ref|NP_198197.1|3e-13light-harvesting complex I chlorophyll a/b binding protein 2 [Arabidopsis thali
JMFN001C07Sequence525009558 (40)ref|XP_011086789.1|1e-79PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]
JMFN002C06Sequence597009558 (40)ref|XP_011086789.1|4e-71PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]
JMFN003B23Sequence567009558 (40)ref|XP_009787153.1|4e-92PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris
JMFN009F07Sequence618009558 (40)ref|XP_011086789.1|7e-110PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]
JMFN010C05Sequence512009558 (40)ref|XP_011086789.1|1e-79PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]
JMFN013A06Sequence623009558 (40)ref|XP_009587026.1|6e-73PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana tomentosif
JMFN018L03Sequence313009558 (40)ref|XP_011086789.1|4e-13PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]
JMFN018L13Sequence603009558 (40)ref|XP_011086789.1|6e-96PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]
JMFN030B12Sequence621009558 (40)ref|XP_009787153.1|1e-121PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris
JMFN032A10Sequence448009558 (40)ref|XP_006368875.1|5e-58hypothetical protein POPTR_0001s13800g [Populus trichocarpa] ref|XP_006368876.1|
JMFN034E23Sequence482009558 (40)ref|XP_006368875.1|6e-68hypothetical protein POPTR_0001s13800g [Populus trichocarpa] ref|XP_006368876.1|
JMFN037O13Sequence597009558 (40)ref|XP_011086789.1|2e-117PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]
JMFS036D08Sequence590009558 (40)ref|XP_009787153.1|1e-109PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris
JMFS058H05Sequence603009558 (40)ref|XP_009787153.1|1e-108PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris
JMFS059G11Sequence627009558 (40)ref|XP_009787153.1|2e-108PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris
JMFS059G12Sequence580009558 (40)ref|XP_009787153.1|8e-62PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris
JMSF027J17Sequence684009558 (40)ref|XP_011086789.1|1e-118PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]736009558 (40)ref|XP_006352516.1|1e-147PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like [Solanum tuber
JMSF030C13Sequence659009558 (40)ref|XP_011086789.1|9e-113PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]747009558 (40)ref|XP_009787153.1|1e-146PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris
JMSF039H09Sequence628009558 (40)ref|XP_011086789.1|1e-104PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]819009558 (40)ref|XP_011086789.1|1e-163PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]
JMSF048L21Sequence688009558 (40)ref|XP_011086789.1|3e-119PREDICTED: chlorophyll a-b binding protein, chloroplastic [Sesamum indicum]682009558 (40)ref|XP_009787153.1|3e-148PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris

Contig 9558 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.

SCORE============================================Contig009558============================================1063         
  27  -------------------------------------------->JMFF048E17                                                         
                                                                             <--------------------------rJMFF048E17  
  42  -------------------------------------------------->JMFF028B03                                                   
                                                  <---------------------------------------------------rJMFF028B03  
  45  -------------------------------------------------->JMFF028B04                                                   
                                                    <-------------------------------------------------rJMFF028B04  
  81 ------------------------------------------------------------->JMSF030C13                                         
                           <---------------------------------------------------------------------rJMSF030C13  
  89  ------------------------------------------------->JMFF006I10                                                    
                               <-----------------------------------------------------------------rJMFF006I10  
 101  ------------------------------------------------------->JMFF017J18                                              
                         <-----------------------------------------------------------------------rJMFF017J18  
 109 ---------------------------------------------------------->JMSF039H09                                            
                  <----------------------------------------------------------------------------rJMSF039H09  
 110 ---------------------------------------------------------------->JMSF027J17                                      
                         <--------------------------------------------------------------------rJMSF027J17  
 120   ---------------------------------------------------->JMFF007O23                                                
                                                <-----------------------------------------------rJMFF007O23  
 130 -------------------------------------------->JMFF023C11                                                          
                      <----------------------------------------------------------------------rJMFF023C11  
 153 ---------------------------------------------------------------->JMSF048L21                                      
                          <---------------------------------------------------------------rJMSF048L21

The following clones don't have the opposite end in this pair.

                                         -------------------------------------------------------->JMFS058H05-         
                                         ------------------------------------------------------>JMFS036D08-           
                               <-----------------------------------------------------------------rJMFF022L08-         
        ----------------------------------------------------->JMFN018L13-                                             
                                         ----------------------------------------------------->JMFS059G12-            
             ------------------------------------------------------->JMFN037O13-                                      
        ----------------------------->JMSF005A20*                                                                     
                                                         -------------------------------------------->JMFN034E23-     
                                         ---------------------------------------------------------->JMFS059G11-       
        ----------------------------->JMFN018L03-                                                                     
      ------------------------------------------------->JMFN001C07-                                                   
        --------------------------------------------------------->JMFN009F07-                                         
        -------------------------------------------------------->JMFN002C06-                                          
                                                ----------------------------------------------------->JMFN003B23-     
                                     ---------------------------------------------------------->JMFN030B12-           
                                                            ----------------------------------------->JMFN032A10-     
       ----------------------------------------------->JMFN010C05-                                                    
                                              ---------------------------------------------------------->JMFN013A06-