clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF003P04 | Sequence | 702 | 012263 (13) | ref|XP_009593018.1| | 3e-115 | PREDICTED: 60S ribosomal protein L7a-2 [Nicotiana tomentosiformis] ref|XP_009793 | |||||
JMFF038E16 | Sequence | 634 | 012263 (13) | ref|XP_009626627.1| | 8e-96 | PREDICTED: 60S ribosomal protein L7a-1 [Nicotiana tomentosiformis] ref|XP_009773 | 752 | 012263 (13) | ref|XP_009593018.1| | 1e-124 | PREDICTED: 60S ribosomal protein L7a-2 [Nicotiana tomentosiformis] ref|XP_009793 |
JMSF003K16 | Sequence | 324 | 012263 (13) | ref|XP_009626627.1| | 2e-29 | PREDICTED: 60S ribosomal protein L7a-1 [Nicotiana tomentosiformis] ref|XP_009773 | 744 | 012263 (13) | ref|XP_009593018.1| | 2e-119 | PREDICTED: 60S ribosomal protein L7a-2 [Nicotiana tomentosiformis] ref|XP_009793 |
JMSF004K16 | Sequence | 361 | 012263 (13) | ref|XP_009626627.1| | 1e-37 | PREDICTED: 60S ribosomal protein L7a-1 [Nicotiana tomentosiformis] ref|XP_009773 | 282 | 012263 (13) | emb|CDP20646.1| | 3e-32 | unnamed protein product, partial [Coffea canephora] |
JMSF008J22 | Sequence | 297 | 012263 (13) | ref|XP_009593018.1| | 8e-23 | PREDICTED: 60S ribosomal protein L7a-2 [Nicotiana tomentosiformis] ref|XP_009793 | 772 | 012263 (13) | ref|XP_009593018.1| | 6e-125 | PREDICTED: 60S ribosomal protein L7a-2 [Nicotiana tomentosiformis] ref|XP_009793 |
JMSF014H20 | Sequence | 144 | 012263 (13) | emb|CDP20647.1| | 3e-19 | unnamed protein product [Coffea canephora] | |||||
JMSF038N10 | Sequence | 634 | 012263 (13) | ref|XP_009593018.1| | 2e-94 | PREDICTED: 60S ribosomal protein L7a-2 [Nicotiana tomentosiformis] ref|XP_009793 | 888 | 012263 (13) | ref|XP_009593018.1| | 2e-135 | PREDICTED: 60S ribosomal protein L7a-2 [Nicotiana tomentosiformis] ref|XP_009793 |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig012263============================================1078 173 --------------------------->JMSF008J22 <-----------------------------------------------------------------------rJMSF008J22 176 ----------------------------->JMSF003K16 <--------------------------------------------------------------------rJMSF003K16 177 --------------------------------------------------------->JMSF038N10 <---------------------------------------------------------------------------------rJMSF038N10 179 -------------------------------->JMSF004K16 <-------------------------rJMSF004K16 189 ---------------------------------------------------------->JMFF038E16 <---------------------------------------------------------------------rJMFF038E16
The following clones don't have the opposite end in this pair.
<------------------------------------------------------------------rJMFF013E22* <----------------------------------------------------rJMFF003P04- <------------rJMSF014H20-