| clone | seq. | 5'-sequence | 3'-sequence | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
| JMFF021P21 | Sequence | 581 | 008024 (16) | ref|NP_001046499.1| | 2e-114 | Os02g0265400 [Oryza sativa Japonica Group] dbj|BAD27890.1| putative vacuolar pro | 685 | 008024 (16) | emb|CDP02214.1| | 4e-111 | unnamed protein product [Coffea canephora] |
| JMFF049E24 | Sequence | 646 | 008024 (16) | ref|XP_003601417.1| | 2e-126 | Vacuolar protein sorting [Medicago truncatula] gb|AES71668.1| vacuolar protein s | 537 | 008024 (16) | ref|XP_009615364.1| | 1e-57 | PREDICTED: vacuolar protein sorting-associated protein 29 [Nicotiana tomentosif |
| JMSF031C20 | Sequence | 614 | 008024 (16) | emb|CDP02214.1| | 3e-96 | unnamed protein product [Coffea canephora] | 762 | 008024 (16) | emb|CDP02214.1| | 3e-99 | unnamed protein product [Coffea canephora] |
| JMSF035P15 | Sequence | 614 | 008024 (16) | ref|NP_001046499.1| | 2e-121 | Os02g0265400 [Oryza sativa Japonica Group] dbj|BAD27890.1| putative vacuolar pro | 735 | 008024 (16) | emb|CDP02214.1| | 1e-93 | unnamed protein product [Coffea canephora] |
| JMSF036P15 | Sequence | 612 | 008024 (16) | ref|NP_001046499.1| | 7e-107 | Os02g0265400 [Oryza sativa Japonica Group] dbj|BAD27890.1| putative vacuolar pro | 432 | 008024 (16) | ref|XP_010666818.1| | 6e-17 | PREDICTED: vacuolar protein sorting-associated protein 29 [Beta vulgaris subsp. |
| JMSF040P19 | Sequence | 703 | 008024 (16) | ref|XP_003601417.1| | 2e-125 | Vacuolar protein sorting [Medicago truncatula] gb|AES71668.1| vacuolar protein s | 815 | 008024 (16) | ref|NP_001046499.1| | 3e-124 | Os02g0265400 [Oryza sativa Japonica Group] dbj|BAD27890.1| putative vacuolar pro |
| JMSF041P19 | Sequence | 575 | 008024 (16) | ref|NP_001046499.1| | 9e-123 | Os02g0265400 [Oryza sativa Japonica Group] dbj|BAD27890.1| putative vacuolar pro | 636 | 008024 (16) | emb|CDP02214.1| | 1e-89 | unnamed protein product [Coffea canephora] |
| JMSF042C20 | Sequence | 756 | 008024 (16) | ref|NP_001046499.1| | 2e-126 | Os02g0265400 [Oryza sativa Japonica Group] dbj|BAD27890.1| putative vacuolar pro | 797 | 008024 (16) | emb|CDP02214.1| | 4e-111 | unnamed protein product [Coffea canephora] |
Explanatory notes: "*" The opposite end is in another contig. "**" The opposite end is in same contig. "#" The opposite end is singlet. "-" The opposite end has no seqence.
SCORE============================================Contig008024============================================ 952 1 ----------------------------------------------------------------------------->JMSF042C20 <-----------------------------------------------------------------------------------rJMSF042C20 23 -------------------------------------------------------------->JMSF035P15 <----------------------------------------------------------------------------rJMSF035P15 37 -------------------------------------------------------------->JMSF036P15 <--------------------------------------------rJMSF036P15 53 --------------------------------------------------------------->JMSF031C20 <-------------------------------------------------------------------------------rJMSF031C20 105 ------------------------------------------------------------------>JMFF049E24 <--------------------------------------------------------rJMFF049E24 149 ---------------------------------------------------------->JMFF021P21 <-----------------------------------------------------------------------rJMFF021P21 150 --------------------------------------------------------------------->JMSF040P19 <-----------------------------------------------------------------------------------rJMSF040P19 158 ------------------------------------------------------------>JMSF041P19 <------------------------------------------------------------------rJMSF041P19
The following clones don't have the opposite end in this pair.