clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF017D15 | Sequence | 545 | 002110 (26) | ref|XP_011084218.1| | 5e-107 | PREDICTED: serine hydroxymethyltransferase 4 [Sesamum indicum] | 777 | 002110 (26) | emb|CBI17302.3| | 6e-117 | unnamed protein product [Vitis vinifera] |
JMFF051B05 | Sequence | 581 | 002110 (26) | ref|XP_011084218.1| | 6e-115 | PREDICTED: serine hydroxymethyltransferase 4 [Sesamum indicum] | |||||
JMFF051D18 | Sequence | 518 | 002110 (26) | ref|XP_011084218.1| | 2e-99 | PREDICTED: serine hydroxymethyltransferase 4 [Sesamum indicum] | |||||
JMFS070D07 | Sequence | 626 | 002110 (26) | ref|XP_011084218.1| | 2e-146 | PREDICTED: serine hydroxymethyltransferase 4 [Sesamum indicum] | |||||
JMFS087E07 | Sequence | 616 | 002110 (26) | ref|XP_011084218.1| | 2e-125 | PREDICTED: serine hydroxymethyltransferase 4 [Sesamum indicum] | |||||
JMFS150C10 | Sequence | 453 | 002110 (26) | gb|KDO42073.1| | 5e-99 | hypothetical protein CISIN_1g0121042mg, partial [Citrus sinensis] gb|KDO42074.1| | |||||
JMSF001N04 | Sequence | 347 | 002110 (26) | ref|XP_011084218.1| | 2e-54 | PREDICTED: serine hydroxymethyltransferase 4 [Sesamum indicum] | 650 | 002110 (26) | emb|CBI17302.3| | 7e-96 | unnamed protein product [Vitis vinifera] |
JMSF008P05 | Sequence | 316 | 002110 (26) | ref|XP_003629608.1| | 7e-50 | Serine hydroxymethyltransferase, partial [Medicago truncatula] | 775 | 002110 (26) | emb|CBI17302.3| | 2e-112 | unnamed protein product [Vitis vinifera] |
JMSF016K16 | Sequence | 496 | 002110 (26) | ref|XP_011084218.1| | 4e-94 | PREDICTED: serine hydroxymethyltransferase 4 [Sesamum indicum] | 735 | 002110 (26) | emb|CBI17302.3| | 2e-119 | unnamed protein product [Vitis vinifera] |
JMSF024C15 | Sequence | 651 | 002110 (26) | ref|XP_011084218.1| | 1e-132 | PREDICTED: serine hydroxymethyltransferase 4 [Sesamum indicum] | 786 | 002110 (26) | emb|CDP11182.1| | 1e-131 | unnamed protein product [Coffea canephora] |
JMSF032I16 | Sequence | 653 | 002110 (26) | ref|XP_011084218.1| | 2e-133 | PREDICTED: serine hydroxymethyltransferase 4 [Sesamum indicum] | 715 | 002110 (26) | emb|CBI17302.3| | 2e-99 | unnamed protein product [Vitis vinifera] |
JMSF032J15 | Sequence | 449 | 002110 (26) | gb|EYU31509.1| | 2e-33 | hypothetical protein MIMGU_mgv1a021252mg, partial [Erythranthe guttata] | |||||
JMSF033D08 | Sequence | 650 | 002110 (26) | ref|XP_011084218.1| | 1e-132 | PREDICTED: serine hydroxymethyltransferase 4 [Sesamum indicum] | 717 | 002110 (26) | emb|CBI17302.3| | 1e-100 | unnamed protein product [Vitis vinifera] |
JMSF037C19 | Sequence | 609 | 002110 (26) | ref|XP_011084218.1| | 2e-121 | PREDICTED: serine hydroxymethyltransferase 4 [Sesamum indicum] | 751 | 002110 (26) | emb|CBI17302.3| | 4e-107 | unnamed protein product [Vitis vinifera] |
JMSF040J16 | Sequence | 605 | 002110 (26) | ref|XP_011084218.1| | 2e-120 | PREDICTED: serine hydroxymethyltransferase 4 [Sesamum indicum] | 796 | 002110 (26) | emb|CDP11182.1| | 1e-136 | unnamed protein product [Coffea canephora] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig002110============================================1726 1 ----------------->JMSF008P05 <--------------------------------------------rJMSF008P05 3 ------------------------------------->JMSF032I16 <----------------------------------------rJMSF032I16 4 ------------------------------------->JMSF033D08 <-----------------------------------------rJMSF033D08 7 ---------------------------------->JMSF037C19 <-------------------------------------------rJMSF037C19 35 ------------------------------->JMFF017D15 <-------------------------------------------rJMFF017D15 64 ------------------->JMSF001N04 <------------------------------------rJMSF001N04 73 ---------------------------->JMSF016K16 <-----------------------------------------rJMSF016K16 79 ------------------------------------->JMSF024C15 <--------------------------------------------rJMSF024C15 190 ---------------------------------->JMSF040J16 <---------------------------------------------rJMSF040J16
The following clones don't have the opposite end in this pair.
------------------------->JMFS150C10- ----------------------------------->JMFS087E07- ---------------------------------->JMSF038N04* ---------------------------------->JMFS070D07- <----------------------------------------rJMSF045J21* ----------------------------->JMFF051D18- <-------------------------rJMSF032J15- --------------------------------->JMFF051B05-