clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF006L01 | Sequence | 533 | 012001 (10) | ref|XP_009590120.1| | 192 | PREDICTED: uncharacterized protein LOC104087385 [Nicotiana tomentosiformis] | 736 | 012001 (10) | emb|CDP12164.1| | 9e-33 | unnamed protein product [Coffea canephora] |
JMFF030O16 | Sequence | 522 | 012001 (10) | ref|XP_009590120.1| | 184 | PREDICTED: uncharacterized protein LOC104087385 [Nicotiana tomentosiformis] | 636 | 012001 (10) | ref|XP_009590120.1| | 169 | PREDICTED: uncharacterized protein LOC104087385 [Nicotiana tomentosiformis] |
JMSF022E06 | Sequence | 637 | 012001 (10) | ref|XP_009590120.1| | 196 | PREDICTED: uncharacterized protein LOC104087385 [Nicotiana tomentosiformis] | 741 | 012001 (10) | ref|XP_004244636.1| | 207 | PREDICTED: uncharacterized protein LOC101260556 [Solanum lycopersicum] |
JMSF022F06 | Sequence | 675 | 012001 (10) | ref|XP_009590120.1| | 201 | PREDICTED: uncharacterized protein LOC104087385 [Nicotiana tomentosiformis] | 785 | 012001 (10) | ref|XP_009590120.1| | 224 | PREDICTED: uncharacterized protein LOC104087385 [Nicotiana tomentosiformis] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig012001============================================ 979 87 ------------------------------------------------------------------->JMSF022F06 <-------------------------------------------------------------------------------rJMSF022F06 93 ------------------------------------------------------>JMFF006L01 <--------------------------------------------------------------------------rJMFF006L01 93 ---------------------------------------------------------------->JMSF022E06 <-------------------------------------------------------------------------rJMSF022E06 187 ---------------------------------------------------->JMFF030O16 <----------------------------------------------------------------rJMFF030O16
The following clones don't have the opposite end in this pair.
------------------------------------------------->JMSF023A12# -------------------->JMSF001I15#