| clone | seq. | 5'-sequence | 3'-sequence | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
| JMFF017I23 | Sequence | 363 | 004284 (13) | ref|XP_010106063.1| | 2e-18 | 30S ribosomal protein S9 [Morus notabilis] gb|EXC07333.1| 30S ribosomal protein | 625 | 004284 (13) | emb|CDP07581.1| | 2e-79 | unnamed protein product [Coffea canephora] |
| JMFF021K21 | Sequence | 534 | 004284 (13) | ref|XP_002283650.1| | 1e-56 | PREDICTED: 30S ribosomal protein S9, chloroplastic [Vitis vinifera] emb|CAN79164 | 686 | 004284 (13) | ref|XP_002283650.1| | 2e-84 | PREDICTED: 30S ribosomal protein S9, chloroplastic [Vitis vinifera] emb|CAN79164 |
| JMSF003J22 | Sequence | 329 | 004284 (13) | ref|XP_010106063.1| | 2e-11 | 30S ribosomal protein S9 [Morus notabilis] gb|EXC07333.1| 30S ribosomal protein | 702 | 004284 (13) | ref|XP_002283650.1| | 2e-84 | PREDICTED: 30S ribosomal protein S9, chloroplastic [Vitis vinifera] emb|CAN79164 |
| JMSF028D02 | Sequence | 610 | 004284 (13) | ref|XP_006366447.1| | 1e-63 | PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Solanum tuberosum] | 739 | 004284 (13) | emb|CDP07581.1| | 6e-80 | unnamed protein product [Coffea canephora] |
| JMSF039N24 | Sequence | 694 | 016842 | ref|XP_009787963.1| | 5e-111 | PREDICTED: chloride channel protein CLC-f-like [Nicotiana sylvestris] | 776 | 004284 (13) | ref|XP_004238213.1| | 3e-84 | PREDICTED: 30S ribosomal protein S9, chloroplastic [Solanum lycopersicum] ref|XP |
| JMSF040K22 | Sequence | 609 | 004284 (13) | ref|XP_006366447.1| | 1e-63 | PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Solanum tuberosum] | 807 | 004284 (13) | ref|XP_004238213.1| | 4e-84 | PREDICTED: 30S ribosomal protein S9, chloroplastic [Solanum lycopersicum] ref|XP |
| JMSF048P01 | Sequence | 621 | 004284 (13) | ref|XP_006366447.1| | 1e-59 | PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Solanum tuberosum] | 718 | 004284 (13) | ref|XP_002283650.1| | 1e-84 | PREDICTED: 30S ribosomal protein S9, chloroplastic [Vitis vinifera] emb|CAN79164 |
Explanatory notes: "*" The opposite end is in another contig. "**" The opposite end is in same contig. "#" The opposite end is singlet. "-" The opposite end has no seqence.
Contig16842 is a singlet.SCORE============================================Contig016842============================================ ============================================Contig004284============================================ 955 <--------------------------------------------------------------------------------rJMSF039N24# --------------------------------------------------------------->JMSF028D02** --------------------------------->JMSF003J22** --------------------------------------------------------------->JMSF040K22** ---------------------------------------------------------------->JMSF048P01** ------------------------------------------------------->JMFF021K21** <--------------------------------------------------------------------------rJMSF048P01** <-------------------------------------------------------------------------rJMSF003J22** ------------------------------------->JMFF017I23** <-----------------------------------------------------------------------------rJMSF028D02** <-----------------------------------------------------------------------rJMFF021K21** <------------------------------------------------------------------------------------rJMSF040K22** <-----------------------------------------------------------------rJMFF017I23**