List of clones in pair P009307.

cloneseq.5'-sequence3'-sequence
lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001P12Sequence566009488 (23)ref|XP_009761975.1|4e-96PREDICTED: 40S ribosomal protein SA-like [Nicotiana sylvestris]761009488 (23)gb|ABA81872.1|1e-94ribosome-associated protein p40-like [Solanum tuberosum]
JMFF025M16Sequence615009488 (23)ref|XP_009772296.1|4e-107PREDICTED: 40S ribosomal protein SA-like isoform X2 [Nicotiana sylvestris]758009488 (23)gb|ABA81872.1|1e-93ribosome-associated protein p40-like [Solanum tuberosum]
JMSF002L18Sequence443009488 (23)gb|EYU25918.1|4e-62hypothetical protein MIMGU_mgv1a0106061mg, partial [Erythranthe guttata]730009488 (23)gb|ABA81872.1|9e-96ribosome-associated protein p40-like [Solanum tuberosum]
JMSF014E13Sequence556009488 (23)ref|XP_009772296.1|1e-98PREDICTED: 40S ribosomal protein SA-like isoform X2 [Nicotiana sylvestris]759009488 (23)gb|ABA81872.1|8e-98ribosome-associated protein p40-like [Solanum tuberosum]
JMSF023P04Sequence677009488 (23)ref|XP_009761975.1|1e-122PREDICTED: 40S ribosomal protein SA-like [Nicotiana sylvestris]743009488 (23)gb|ABA81872.1|3e-89ribosome-associated protein p40-like [Solanum tuberosum]
JMSF027L18Sequence666009488 (23)ref|XP_009602638.1|2e-130PREDICTED: 40S ribosomal protein SA {ECO:0000255|HAMAP-Rule:MF_03015}-like [Nic136021481
JMSF030D23Sequence654009488 (23)ref|XP_009772296.1|1e-116PREDICTED: 40S ribosomal protein SA-like isoform X2 [Nicotiana sylvestris]607009488 (23)gb|ABA81872.1|6e-59ribosome-associated protein p40-like [Solanum tuberosum]
JMSF041D09Sequence746009488 (23)ref|XP_010322515.1|2e-135PREDICTED: 40S ribosomal protein SA isoform X2 [Solanum lycopersicum]656009488 (23)gb|ABA81872.1|1e-70ribosome-associated protein p40-like [Solanum tuberosum]
JMSF042E01Sequence725009488 (23)ref|NP_001275039.1|6e-13740S ribosomal protein SA-like [Solanum tuberosum] gb|ABB29931.1| P40-like protei756009488 (23)gb|ABA81872.1|1e-94ribosome-associated protein p40-like [Solanum tuberosum]
JMSF044N14Sequence744009488 (23)gb|KJB67081.1|8e-122hypothetical protein B456_010G173800 [Gossypium raimondii]748009488 (23)ref|NP_001275039.1|2e-7040S ribosomal protein SA-like [Solanum tuberosum] gb|ABB29931.1| P40-like protei
JMSF051M07Sequence684009488 (23)ref|XP_009761975.1|3e-124PREDICTED: 40S ribosomal protein SA-like [Nicotiana sylvestris]749009488 (23)gb|ABA81872.1|1e-94ribosome-associated protein p40-like [Solanum tuberosum]
JMSF053K23Sequence651009488 (23)ref|XP_009602638.1|1e-117PREDICTED: 40S ribosomal protein SA {ECO:0000255|HAMAP-Rule:MF_03015}-like [Nic880009488 (23)gb|ABA81872.1|4e-123ribosome-associated protein p40-like [Solanum tuberosum]

Contig 9488 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.

SCORE============================================Contig009488============================================1120         
   1 ------------------------------------------------------------------>JMSF041D09                                    
                                              <----------------------------------------------------------rJMSF041D09  
   4 ------------------------------------------------------------>JMSF051M07                                          
                                      <------------------------------------------------------------------rJMSF051M07  
   5 --------------------------------------------------------->JMSF030D23                                             
                                                   <-----------------------------------------------------rJMSF030D23  
   7  ----------------------------------------------------------->JMSF023P04                                          
                                        <----------------------------------------------------------------rJMSF023P04  
  10  ------------------------------------------------------------------>JMSF044N14                                   
                                      <------------------------------------------------------------------rJMSF044N14  
  12 ------------------------------------------------------>JMFF025M16                                                
                                      <-----------------------------------------------------------------rJMFF025M16  
  17  -------------------------------------------------->JMFF001P12                                                   
                                      <-----------------------------------------------------------------rJMFF001P12  
  17  --------------------------------------------------------->JMSF053K23                                            
                           <----------------------------------------------------------------------------rJMSF053K23  
  23 -------------------------------------->JMSF002L18                                                                
                                      <----------------------------------------------------------------rJMSF002L18  
  29    ------------------------------------------------->JMSF014E13                                                  
                                     <-------------------------------------------------------------------rJMSF014E13  
  39    ---------------------------------------------------------------->JMSF042E01                                   
                                      <-----------------------------------------------------------------rJMSF042E01

The following clones don't have the opposite end in this pair.

                    -------------------------------------------->JMSF027L18#