List of clones in pair P005142.

cloneseq.5'-sequence3'-sequence
lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013M07Sequence461000235 (181)ref|XP_006361530.1|3e-73PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like isoform X1 [S704024503ref|XP_009109166.1|4e-23PREDICTED: small ubiquitin-related modifier 1 [Brassica rapa]

Contig 235 BLAST Hits against nr-aa DB Show

Contig 24503 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.

Contig24503 is a singlet.
SCORE============================================Contig000235============================================1010         ============================================Contig024503============================================

                      ------------------------------------------------------------>JMFN009D05-                        
        ------------------------------------------------------------->JMFS102E07-                                     
        -------------------------------------------------------------->JMFN008G20-                                    
       -------------------------------------------------------------->JMFS115H10-                                     
         -------------------------------------------------------------->JMFN005C09-                                   
                                                        <----------------------------rJMFF037A05*                     
      ------------------------------>JMSF006K24-                                                                      
                                            ------------------------------------------------------>JMFS043B11-        
           ---------------------------------------->JMFN016K18-                                                       
        ------------------------------------------------>JMFS158G06-                                                  
                    <---------------------------------------------------------------------------rJMSF021J23*          
                      ------------------------------------------------------------>JMFN006D08-                        
        -------------------------------------------------------------->JMFN013E02-                                    
                                            <--------------------------------------rJMSF043B16-                       
      -------------------->JMSF012C24*                                                                                
                   <----------------------------------------------------------------------------rJMSF007H09*          
     -------------------------->JMSF006O13-                                                                           
       ----------------------------------------------------------->JMFN030A02-                                        
                                                                          <----------------rJMSF049M20-               
      --------------------------------------------->JMSF013M07#                                                       
      ------------------------------------------->JMSF008F17-                                                         
                                            ------------------------------------------------------>JMFS033C02-        
        ----------------------------------------------------------->JMFS088A03-                                       
                         <--------------------------------------------------------------------------rJMSF025M18*      
                                                             <--------------------------------rJMFF013M21-            
        ----------------------------------------------------------->JMFS099B07-                                       
       -------------------------------------------------------------->JMFN017L08-                                     
        ------------------------------------------------------------->JMFN011L18-                                     
                                           <-------------------------------------------------------JMFN018E22-        
       ------------------------------------------------------------>JMFN037E19-                                       
        --------------------------------------------------------->JMFN018P05-                                         
                                                 <----------------------------------------------rJMFF003C24-          
                             <------------------------------------------------------------------rJMSF026M16*          
        ------------------------------------------------------>JMFS103C08-                                            
                                               <----------------------------------------------------JMFN030N08-       
     -------------------------------------------------------->JMSF025H17-                                             
                     <--------------------------------------------------------------------------rJMSF047O05*          
                                                     <----------------------------------------rJMFF030M20-            
        -------------------------------------------------------->JMFS048D04-                                          
       -------------------------------------------------------------->JMFS061G02-                                     
                          <------------------------------------------------------------------------rJMSF031N09*       
       -------------------------------------------------------------->JMFN010O04-                                     
                                                         <-------------------------------------rJMSF006O15*           
        --------------------------------------------------------->JMFN017P04-                                         
       ------------------------------------------------------------>JMFN014I15-                                       
                                                    ---------------------------------------------->JMFN012K19-        
        -------------------------------------------------------------->JMFN006P06-                                    

                     <--------------------------------------------------------------------------rJMSF013K21**
                         <----------------------------------------------------------------------rJMFF016C15**
     --------------------------------------------------------------->JMSF052J08**
     ---------------------------------------------->JMSF016I18**
                  <----------------------------------------------------------------------------rJMSF026N16**
     --------------------------------------------------------------->JMSF024I07**
              <---------------------------------------------------------------------------------rJMSF042F09**
                  <----------------------------------------------------------------------------rJMSF026L18**
                    <---------------------------------------------------------------------------rJMSF007C22**
     --------------------------------------------------------------->JMSF034L09**
                   <---------------------------------------------------------------------------rJMSF046I16**
                   <----------------------------------------------------------------------------rJMSF017O12**
     ------------------------------------------------------------------------------>JMSF046I16**
                     <--------------------------------------------------------------------------rJMSF045H15**
                                                             <------------------------------------------rJMSF049A19**
     ----------------------------------------------------------------->JMSF047K06**
     ----------------------------------------------------------------->JMSF048E05**
                           <--------------------------------------------------------------------rJMFF008N20**
      --------------------------------------------------------------->JMSF049A19**
      --------------------------------------------->JMSF018D15**
                   <----------------------------------------------------------------------------rJMSF015P15**
      --------------------------------------------->JMFF013M10**
     ------------------------>JMSF011M21**
      ------------------------------------------------------>JMFF008N20**
      ---------------------------------->JMSF008L08**
                              <-----------------------------------------------------------------rJMFF036K09**
     --------------------------------------------->JMSF001F06**
      --------------------------------------------------------------->JMSF026L18**
      ------------------------------------------------------->JMFF036K09**
      -------------------------------------------->JMSF013D16**
                    <---------------------------------------------------------------------------rJMSF025M22**
      ------------------------->JMSF013K21**
     --------------------------------------------------------------->JMSF052G19**
                  <----------------------------------------------------------------------------rJMSF041K21**
      ----------------------------------------------------------------->JMSF026N16**
      ------------------------------------------>JMFF010J11**
          <------------------------------------------------------------------------------------rJMSF039D13**
                  <----------------------------------------------------------------------------rJMSF016I18**
                   <----------------------------------------------------------------------------rJMSF022D03**
     ----------------------------------------------------------->JMSF040P20**
                  <-------------------------------------------------------------------------------------rJMSF052G19**
      --------------------------------------------------------------->JMSF025M22**
      -------------------------------------------->JMSF015N09**
                    <----------------------------------------------------------------------------rJMSF019G18**
                               <------------------------------------------------------------------------rJMSF008L08**
              <--------------------------------------------------------------------------------rJMSF039O08**
      ---------------------------------------------------------------------------->JMSF043N04**
      ----------------------------------------------------------------->JMSF022D03**
     ----------------------------------------------------------------->JMSF037H11**
      ---------------------------------------------->JMFF028A13**
                   <------------------------------------------------------------------------------rJMFF025F24**
                        <-----------------------------------------------------------------------rJMSF051M12**
     ---------------------------------------------------------------------->JMSF042F09**
      ----------------------------------------------->JMFF016C15**
                    <--------------------------------------------------------------------------rJMSF002N06**
      ---------------------------------------------------------------------------->JMSF043J21**
     -------------------------->JMSF016H19**
                  <----------------------------------------------------------------------------rJMSF001F06**
                      <-------------------------------------------------------------------------rJMSF026O13**
                         <---------------------------------------------------------------------rJMSF034L09**
      -------------------------------------------->JMSF019G18**
      --------------------------------------------->JMFF031L08**
                        <------------------------------------------------------------------------------rJMSF052A14**
                     <-------------------------------------------------------------------------rJMSF030P07**
      --------------------------------------------------------------->JMSF039O08**
                  <----------------------------------------------------------------------------rJMSF015N09**
      --------------------------------------------------------------->JMSF033N23**
                         <----------------------------------------------------------------------rJMFF013M10**
      ------------------------------------------------------>JMFF028H08**
                     <--------------------------------------------------------------------------rJMSF049I17**
                 <------------------------------------------------------------------------------rJMSF016H19**
                                  <------------------------------------------------------------rJMSF033N23**
      --------------------------------------------->JMSF015P15**
                        <-------------------------------------------------------------------------rJMFF032A06**
      -------------------------------------------------------------->JMSF022C13**
                  <-----------------------------------------------------------------------------rJMSF048E05**
                        <-----------------------------------------------------------------------rJMFF028H08**
      ---------------------------------------------------------------->JMSF039D13**
                                                   <------------------------------------------------rJMFF042F03**
                               <--------------------------------------------------------------------rJMSF019J06**
      ----------------------------------------------------------------->JMSF038E23**
         <-------------------------------------------------------------------------------------rJMSF038E23**
                              <------------------------------------------------------------------rJMFF003I05**
                        <-----------------------------------------------------------------------rJMFF010E19**
                               <------------------------------------------------------------------rJMFF031L08**
                     <-----------------------------------------------------------------------rJMSF002F06**
                               <---------------------------------------------------------------rJMSF037N01**
      --------------------------------------------------------------------------->JMSF041K21**
      --------------------------------------------------------------->JMSF039H13**
      --------------------------------------------------------------->JMSF030P07**
              <----------------------------------------------------------------------------------rJMSF040P20**
     --------------------------------------------------------------->JMFF042F03**
                                 <---------------------------------------------------------------rJMFF022B14**
      ------------------------------------------------------>JMFF016M24**
                        <----------------------------------------------------------------------rJMSF024I07**
                        <----------------------------------------------------------------------rJMSF047K06**
      ------------------------------------------------------>JMFF032A06**
      ---------------------------------------------------------------->JMSF048N05**
      -------------------------------------------->JMSF017O12**
     -------------------------------------------->JMSF002F06**
     ----------------------------------------------------------------->JMSF047K09**
     --------------------------------------------------------------->JMSF052A14**
      ---------------------------------------------------------------->JMSF049I17**
                                     <---------------------------------------------------------rJMSF006H09**
                     <-------------------------------------------------------------------------rJMSF043N04**
      --------------------------------------------------------------->JMSF037N01**
      ---------------------------------------------->JMFF003I05**
      ------------------------------------>JMSF002N06**
                        <----------------------------------------------------------------------rJMSF022C13**
                              <-----------------------------------------------------------------rJMSF033N19**
      <----------------------------------------------------------------------------------------rJMSF039H13**
                    <---------------------------------------------------------------------------rJMSF047K09**
                        <----------------------------------------------------------------------rJMSF043J21**
                                  <-----------------------------------------------------------------rJMFF010J11**
      ----------------------------------------------------------------->JMSF051M12**
                        <----------------------------------------------------------------------rJMSF048N05**
     ----------------------------------->JMSF007C22**
     ----------------------------------------------------------------->JMSF033N19**
      ------------------------------------------------------->JMFF010E19**
                                     <---------------------------------------------------------------rJMFF025H07**
      ----------------------------------------------------------->JMSF019J06**
      -------------------------------------------------------------->JMSF026O13**
               <-------------------------------------------------------------------------------rJMSF018D15**
                        <----------------------------------------------------------------------rJMSF011M21**
      ------------------------------------------------------->JMFF025F24**
               <---------------------------------------------------------------------------rJMSF052J08**
      ---------------------------------------------->JMFF025H07**
                        <------------------------------------------------------------------------rJMFF016M24**
                                        <-----------------------------------------------------------------rJMFF028A13**
                  <----------------------------------------------------------------------------rJMSF013D16**
     -------------------------------------------------------------------->JMSF045H15**
                   <---------------------------------------------------------------------------rJMSF037H11**
      ------------------------------------------->JMSF006H09**
      ----------------------------------------------------->JMFF022B14**