List of clones in pair P004661.

cloneseq.5'-sequence3'-sequence
lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP007H04Sequence287008000 (116)
JMFF001B15Sequence549008000 (116)gb|AFW86017.1|2e-92histone H3 [Zea mays]688008000 (116)gb|AFW86017.1|9e-92histone H3 [Zea mays]
JMFF001E19Sequence629004578 (31)
JMFF002J13Sequence621008000 (116)gb|AFW86017.1|4e-92histone H3 [Zea mays]683008000 (116)gb|KJB17320.1|9e-91hypothetical protein B456_003G041300 [Gossypium raimondii]
JMFF004N24Sequence410004578 (31)ref|XP_006351636.1|2e-10PREDICTED: histone H1-like [Solanum tuberosum]671004578 (31)
JMFF005H04Sequence511008000 (116)gb|AFW86017.1|1e-92histone H3 [Zea mays]700008000 (116)gb|AFW86017.1|3e-91histone H3 [Zea mays]
JMFF005N20Sequence447008000 (116)gb|AFW86017.1|7e-88histone H3 [Zea mays]688008000 (116)gb|AFW86017.1|9e-92histone H3 [Zea mays]
JMFF005P08Sequence488008000 (116)gb|AFW86017.1|5e-92histone H3 [Zea mays]707008000 (116)gb|AFW86017.1|3e-91histone H3 [Zea mays]
JMFF006D14Sequence546008000 (116)gb|AFW86017.1|4e-92histone H3 [Zea mays]705008000 (116)gb|AFW86017.1|3e-91histone H3 [Zea mays]
JMFF006L06Sequence612008000 (116)gb|AFW86017.1|4e-92histone H3 [Zea mays]688008000 (116)gb|AFW86017.1|9e-92histone H3 [Zea mays]
JMFF007B20Sequence676008000 (116)emb|CBI23573.3|4e-91unnamed protein product [Vitis vinifera]
JMFF007O14Sequence607008000 (116)gb|AFW86017.1|3e-92histone H3 [Zea mays]697008000 (116)gb|AFW86017.1|3e-91histone H3 [Zea mays]
JMFF008A18Sequence674004578 (31)
JMFF008M06Sequence674004578 (31)
JMFF009B14Sequence159008000 (116)ref|XP_010444908.1|9e-24PREDICTED: histone H3.3-like [Camelina sativa]
JMFF009E20Sequence547008000 (116)gb|AFW86017.1|2e-92histone H3 [Zea mays]677008000 (116)gb|AFW86017.1|3e-91histone H3 [Zea mays]
JMFF011E06Sequence578004578 (31)gb|KJB42223.1|1e-19hypothetical protein B456_007G143000 [Gossypium raimondii]690004578 (31)
JMFF012B23Sequence534008000 (116)gb|AFW86017.1|4e-92histone H3 [Zea mays]686008000 (116)gb|AFW86017.1|2e-91histone H3 [Zea mays]
JMFF012D24Sequence553008000 (116)gb|AFW86017.1|4e-92histone H3 [Zea mays]720008000 (116)gb|AFW86017.1|4e-91histone H3 [Zea mays]
JMFF014K18Sequence477008000 (116)gb|AFW86017.1|6e-93histone H3 [Zea mays]710008000 (116)gb|AFW86017.1|1e-91histone H3 [Zea mays]
JMFF014L03Sequence481008000 (116)gb|AFW86017.1|2e-92histone H3 [Zea mays]721008000 (116)gb|AFW86017.1|2e-91histone H3 [Zea mays]
JMFF015K05Sequence331008000 (116)ref|XP_006288773.1|3e-51hypothetical protein CARUB_v10002094mg, partial [Capsella rubella] gb|EOA21671.1304008000 (116)sp|P06353.1|H33_HORVU8e-40RecName: Full=Histone H3.3, partial [Hordeum vulgare] gb|AAA32965.1| histone H3
JMFF018J12Sequence502008000 (116)gb|AFW86017.1|2e-92histone H3 [Zea mays]683008000 (116)gb|AFW86017.1|2e-91histone H3 [Zea mays]
JMFF023A07Sequence339008000 (116)gb|KJB17320.1|2e-57hypothetical protein B456_003G041300 [Gossypium raimondii]655008000 (116)emb|CBI23573.3|1e-87unnamed protein product [Vitis vinifera]
JMFF023P06Sequence476008000 (116)gb|AFW86017.1|6e-91histone H3 [Zea mays]676008000 (116)gb|AFW86017.1|3e-91histone H3 [Zea mays]
JMFF025C09Sequence480008000 (116)gb|AFW86017.1|2e-92histone H3 [Zea mays]641008000 (116)gb|AFW86017.1|2e-91histone H3 [Zea mays]
JMFF025N04Sequence558004578 (31)gb|KJB42223.1|1e-19hypothetical protein B456_007G143000 [Gossypium raimondii]753004578 (31)emb|CDX84823.1|5e-04BnaA03g14070D [Brassica napus]
JMFF027H16Sequence524008000 (116)gb|AFW86017.1|4e-92histone H3 [Zea mays]641008000 (116)gb|AFW86017.1|2e-91histone H3 [Zea mays]
JMFF028H01Sequence514008000 (116)gb|AFW86017.1|1e-92histone H3 [Zea mays]687008000 (116)gb|AFW86017.1|9e-92histone H3 [Zea mays]
JMFF028O11Sequence550008000 (116)gb|AFW86017.1|2e-92histone H3 [Zea mays]668008000 (116)gb|AFW86017.1|8e-92histone H3 [Zea mays]
JMFF030I21Sequence330008000 (116)gb|KJB17320.1|2e-55hypothetical protein B456_003G041300 [Gossypium raimondii]702008000 (116)gb|AFW86017.1|3e-91histone H3 [Zea mays]
JMFF031A15Sequence566004578 (31)gb|KJB42223.1|2e-18hypothetical protein B456_007G143000 [Gossypium raimondii]663004578 (31)
JMFF031P22Sequence509008000 (116)gb|AFW86017.1|2e-92histone H3 [Zea mays]
JMFF033N12Sequence480008000 (116)gb|AFW86017.1|5e-92histone H3 [Zea mays]718008000 (116)gb|AFW86017.1|1e-90histone H3 [Zea mays]
JMFF034C01Sequence472004578 (31)ref|XP_006351636.1|2e-13PREDICTED: histone H1-like [Solanum tuberosum]709004578 (31)
JMFF036H09Sequence542008000 (116)gb|AFW86017.1|2e-92histone H3 [Zea mays]702008000 (116)gb|AFW86017.1|3e-91histone H3 [Zea mays]
JMFF038A06Sequence620008000 (116)gb|AFW86017.1|4e-92histone H3 [Zea mays]702008000 (116)gb|AFW86017.1|3e-91histone H3 [Zea mays]
JMFF038M08Sequence544008000 (116)gb|AFW86017.1|2e-92histone H3 [Zea mays]669008000 (116)gb|AFW86017.1|8e-92histone H3 [Zea mays]
JMFF043A24Sequence637008000 (116)gb|AFW86017.1|2e-91histone H3 [Zea mays]597008000 (116)gb|AFW71933.1|2e-77histone H3, partial [Zea mays]
JMFF043H17Sequence640004578 (31)gb|KJB42223.1|3e-19hypothetical protein B456_007G143000 [Gossypium raimondii]470004578 (31)
JMFF043M07Sequence646008000 (116)gb|AFW86017.1|6e-92histone H3 [Zea mays]432008000 (116)gb|EMS66053.1|3e-21Histone H3.3 [Triticum urartu]
JMFF045P01Sequence631008000 (116)gb|AFW86017.1|1e-91histone H3 [Zea mays]555008000 (116)gb|AFW71933.1|1e-67histone H3, partial [Zea mays]
JMFF046G06Sequence567008000 (116)gb|AFW86017.1|5e-92histone H3 [Zea mays]560008000 (116)ref|WP_039311726.1|1e-52hypothetical protein [Paenibacillus sp. IHB B 3415] ref|NP_195713.1| Histone H3.
JMFF046J07Sequence561004578 (31)ref|XP_010557164.1|8e-22PREDICTED: histone H1.2-like [Tarenaya hassleriana]480004578 (31)
JMFF050I02Sequence593008000 (116)gb|AES90732.2|2e-87core histone H2A/H2B/H3/H4 [Medicago truncatula]534008000 (116)emb|CAN70652.1|6e-65hypothetical protein VITISV_010022 [Vitis vinifera]
JMFN002A08Sequence532008000 (116)emb|CBI23573.3|6e-92unnamed protein product [Vitis vinifera]
JMFN002B05Sequence541008000 (116)gb|KJB17320.1|1e-91hypothetical protein B456_003G041300 [Gossypium raimondii]
JMFN002D11Sequence531008000 (116)gb|KJB17320.1|1e-91hypothetical protein B456_003G041300 [Gossypium raimondii]
JMFN003F02Sequence616008000 (116)ref|XP_002029274.1|4e-70GL16668 [Drosophila persimilis] gb|EDW37681.1| GL16668 [Drosophila persimilis]
JMFN004K08Sequence669008000 (116)gb|AFW86017.1|2e-91histone H3 [Zea mays]
JMFN004K14Sequence670008000 (116)gb|KJB17320.1|7e-91hypothetical protein B456_003G041300 [Gossypium raimondii]
JMFN007I22Sequence624008000 (116)gb|KJB17320.1|4e-91hypothetical protein B456_003G041300 [Gossypium raimondii]
JMFN007J22Sequence618008000 (116)gb|KJB17320.1|4e-91hypothetical protein B456_003G041300 [Gossypium raimondii]
JMFN007N08Sequence594004578 (31)gb|KJB42223.1|7e-13hypothetical protein B456_007G143000 [Gossypium raimondii]
JMFN008D01Sequence639008000 (116)emb|CBI23573.3|8e-90unnamed protein product [Vitis vinifera]
JMFN009C11Sequence597008000 (116)emb|CAN70652.1|3e-80hypothetical protein VITISV_010022 [Vitis vinifera]
JMFN013O07Sequence398008000 (116)ref|XP_004621945.1|2e-19PREDICTED: histone H3.1-like [Sorex araneus]
JMFN015N03Sequence624004578 (31)
JMFN017B23Sequence618008000 (116)gb|EYU30980.1|3e-86hypothetical protein MIMGU_mgv1a014700mg [Erythranthe guttata]
JMFN017E21Sequence626008000 (116)gb|KJB17320.1|4e-91hypothetical protein B456_003G041300 [Gossypium raimondii]
JMFN025I02Sequence615004578 (31)
JMFN029B14Sequence626004578 (31)gb|KJB42223.1|2e-19hypothetical protein B456_007G143000 [Gossypium raimondii]
JMFN030E08Sequence597008000 (116)emb|CBI23573.3|2e-91unnamed protein product [Vitis vinifera]
JMFN030M06Sequence590008000 (116)gb|AFW86017.1|1e-91histone H3 [Zea mays]
JMFN031C18Sequence531008000 (116)ref|WP_039311726.1|7e-59hypothetical protein [Paenibacillus sp. IHB B 3415] ref|NP_195713.1| Histone H3.
JMFN032H02Sequence626004578 (31)ref|XP_004247225.1|1e-19PREDICTED: histone H1 [Solanum lycopersicum] sp|P37218.1|H1_SOLLC RecName: Full=
JMFN033F21Sequence627008000 (116)emb|CBI23573.3|2e-91unnamed protein product [Vitis vinifera]
JMFN033I14Sequence622008000 (116)emb|CBI23573.3|2e-91unnamed protein product [Vitis vinifera]
JMFN033J23Sequence604008000 (116)gb|AFW71933.1|1e-64histone H3, partial [Zea mays]
JMFN036F05Sequence622008000 (116)emb|CBI23573.3|2e-91unnamed protein product [Vitis vinifera]
JMFN040B14Sequence638008000 (116)emb|CBI23573.3|2e-91unnamed protein product [Vitis vinifera]
JMFN042K06Sequence623004578 (31)gb|KJB42223.1|3e-19hypothetical protein B456_007G143000 [Gossypium raimondii]
JMFN045I03Sequence604008000 (116)gb|AFW71933.1|1e-64histone H3, partial [Zea mays]
JMFS042A12Sequence584004578 (31)ref|XP_008456174.1|2e-18PREDICTED: histone H1-like [Cucumis melo]
JMSF005I06Sequence342008000 (116)gb|KJB17320.1|5e-57hypothetical protein B456_003G041300 [Gossypium raimondii]538008000 (116)gb|AFW71933.1|1e-67histone H3, partial [Zea mays]
JMSF006A21Sequence328008000 (116)gb|KJB17320.1|2e-55hypothetical protein B456_003G041300 [Gossypium raimondii]
JMSF006A23Sequence249004578 (31)484008000 (116)ref|WP_039311726.1|8e-68hypothetical protein [Paenibacillus sp. IHB B 3415] ref|NP_195713.1| Histone H3.
JMSF007A21Sequence332008000 (116)gb|KJB17320.1|2e-55hypothetical protein B456_003G041300 [Gossypium raimondii]635008000 (116)gb|AFW86017.1|8e-89histone H3 [Zea mays]
JMSF024E15Sequence611008000 (116)gb|AFW86017.1|1e-91histone H3 [Zea mays]638008000 (116)gb|AFW86017.1|2e-91histone H3 [Zea mays]
JMSF027J11Sequence608008000 (116)gb|AFW86017.1|8e-92histone H3 [Zea mays]723008000 (116)gb|AFW86017.1|3e-91histone H3 [Zea mays]
JMSF029M09Sequence610008000 (116)gb|AFW86017.1|8e-92histone H3 [Zea mays]689008000 (116)gb|AFW86017.1|2e-91histone H3 [Zea mays]
JMSF030G03Sequence616008000 (116)gb|AFW86017.1|4e-92histone H3 [Zea mays]690008000 (116)gb|AFW86017.1|1e-91histone H3 [Zea mays]
JMSF034C14Sequence617008000 (116)gb|AFW86017.1|2e-91histone H3 [Zea mays]647008000 (116)gb|AFW86017.1|3e-91histone H3 [Zea mays]
JMSF034F17Sequence621008000 (116)gb|EYU30980.1|7e-65hypothetical protein MIMGU_mgv1a014700mg [Erythranthe guttata]694008000 (116)gb|EYU30980.1|2e-64hypothetical protein MIMGU_mgv1a014700mg [Erythranthe guttata]
JMSF036G08Sequence621008000 (116)gb|AFW86017.1|4e-92histone H3 [Zea mays]692008000 (116)gb|AFW86017.1|1e-91histone H3 [Zea mays]
JMSF037H22Sequence610008000 (116)gb|AFW86017.1|8e-92histone H3 [Zea mays]688008000 (116)gb|AFW86017.1|2e-91histone H3 [Zea mays]
JMSF038F18Sequence647004578 (31)gb|KJB42223.1|2e-19hypothetical protein B456_007G143000 [Gossypium raimondii]857004578 (31)gb|KJB42223.1|3e-18hypothetical protein B456_007G143000 [Gossypium raimondii]
JMSF039I15Sequence621008000 (116)gb|AFW86017.1|3e-92histone H3 [Zea mays]694008000 (116)gb|AFW86017.1|7e-92histone H3 [Zea mays]
JMSF039K15Sequence625008000 (116)gb|AFW86017.1|3e-92histone H3 [Zea mays]693008000 (116)gb|AFW86017.1|7e-92histone H3 [Zea mays]
JMSF046F05Sequence774004578 (31)gb|KJB42223.1|5e-19hypothetical protein B456_007G143000 [Gossypium raimondii]807004578 (31)gb|KJB42223.1|3e-09hypothetical protein B456_007G143000 [Gossypium raimondii]
JMSF046F06Sequence788004578 (31)gb|KJB42223.1|5e-19hypothetical protein B456_007G143000 [Gossypium raimondii]783004578 (31)
JMSF048D21Sequence689008000 (116)gb|AFW86017.1|2e-76histone H3 [Zea mays]662008000 (116)gb|AFW86017.1|1e-76histone H3 [Zea mays]

Contig 4578 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.

SCORE============================================Contig004578============================================1270         
   2 ------------------------------------------->JMFF046J07                                                           
                                                                   <-------------------------------------rJMFF046J07  
  68 -------------------------------------------->JMFF031A15                                                          
                                                <---------------------------------------------------rJMFF031A15  
  84 ------------------------------->JMFF004N24                                                                       
                                              <----------------------------------------------------rJMFF004N24  
 101 ------------------------------------------------------------->JMSF046F06                                         
                                   <-------------------------------------------------------------rJMSF046F06  
 108 -------------------------------------------------->JMSF038F18                                                    
                             <-------------------------------------------------------------------rJMSF038F18  
 109 ------------------------------------------------------------>JMSF046F05                                          
                                 <---------------------------------------------------------------rJMSF046F05  
 150 ------------------------------------>JMFF034C01                                                                  
                                      <-------------------------------------------------------rJMFF034C01  
 165 ------------------------------------------->JMFF025N04                                                           
                                 <----------------------------------------------------------rJMFF025N04  
 167 --------------------------------------------->JMFF011E06                                                         
                                      <-----------------------------------------------------rJMFF011E06  
 284 ----------------------------------------------->JMFF043H17                                                       
                                              <------------------------------------rJMFF043H17

The following clones don't have the opposite end in this pair.

       --------------------------------------------->JMFN042K06-                                                      
                                ---------------------------------------------->JMFN007N08-                            
                                             ------------------------------------------------>JMFN025I02-             
                                                 <------------------------------------------------rJMFF001E19-        
     ------------------->JMSF006A23*                                                                                  
                             ------------------------------------------->JMFS042A12-                                  
                     ------------------------------------------------>JMFN032H02-                                     
       ------------------------------------------------>JMFN029B14-                                                   
                                          ------------------------------------------------>JMFN015N03-                
                                              <----------------------------------------------------rJMFF008M06-       
                                             <----------------------------------------------------rJMFF008A18-