Contig 014122:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF050A13Sequence648000122 (3)ref|XP_009768824.1|252PREDICTED: uncharacterized protein LOC104219789 [Nicotiana sylvestris]614014122 (2)ref|XP_006343928.1|3e-07PREDICTED: G patch domain-containing protein 4-like [Solanum tuberosum]
JMSF052B09Sequence652000122 (3)ref|XP_009768824.1|255PREDICTED: uncharacterized protein LOC104219789 [Nicotiana sylvestris]720014122 (2)ref|XP_006343928.1|2e-20PREDICTED: G patch domain-containing protein 4-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF052B09+                                                               TGTTNTG
                      ____________________________________________________________
consensus                                                                  TGTTNTG
 
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rJMSF052B09+          TGAGGAGGATCAAGAAAATCTCTATAAACNTGTTCAAGATAAATCCCCATCTGGAAAACN
                      ____________________________________________________________
consensus             TGAGGAGGATCAAGAAAATCTCTATAAACNTGTTCAAGATAAATCCCCATCTGGAAAACN
 
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rJMSF052B09+          AGGGCTGGGCATCNAGGNCNAGCCCNAAAAGATAGCTGGTTGCTTNTTTCNGGGGAAAAA
rJMSF050A13+                                                        TTTCAGGGGAAAAA
                      ____________________________________________________________
consensus             AGGGCTGGGCATCNAGGNCNAGCCCNAAAAGATAGCTGGTTGCTTNTTTCAGGGGAAAAA
 
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rJMSF052B09+          GACNTCTTTTGATGACNGCGATGGGGAAGATTCCTCCGNTTCNAACTTGTCGNTGAAAGC
rJMSF050A13+          GACATCTTTTGATGACAGCGATGGGGAAGATTCCTCCGATTCAAACTTGTCGATGAAAGC
                      ____________________________________________________________
consensus             GACATCTTTTGATGACAGCGATGGGGAAGATTCCTCCGATTCAAACTTGTCGATGAAAGC
 
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rJMSF052B09+          NAAAAATGATGAAATTTNCNAGTCNTGCGNGAATGATAACCCNAAAATGNAATTAAAGAA
rJMSF050A13+          AAAAAATGATGAAATTTACAAGTCCTGCGNGAATGNTAACCCNAAAATGAAATTAAAGAA
                      ____________________________________________________________
consensus             AAAAAATGATGAAATTTACAAGTCCTGCGNGAATGATAACCCNAAAATGAAATTAAAGAA
 
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rJMSF052B09+          GTTGNGTAAACCCCTTNTTAAACCGGCCCCCGGGAATTCCNTGAAACTGAAGCNACTCAA
rJMSF050A13+          GTTGTGTAAACCCCTTNTTAAACCGGCCCCCGGGAATTCCNTGAAACTGAAGCNACTCAA
                      ____________________________________________________________
consensus             GTTGTGTAAACCCCTTNTTAAACCGGCCCCCGGGAATTCCNTGAAACTGAAGCNACTCAA
 
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rJMSF052B09+          AGCTNTAATAGATGNGCNATCNTCNGCNGTTTTTGAGAACTTCTNTGAAAAAGNTGCTAT
rJMSF050A13+          AGTTNTAATAGNTGNGCNATCNTCNGCTGTTTTTGAGAACTTCTNTGAAAAAGNTGCTAT
                      ____________________________________________________________
consensus             AGTTNTAATAGATGNGCNATCNTCNGCTGTTTTTGAGAACTTCTNTGAAAAAGNTGCTAT
 
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rJMSF052B09+          AGCTCNTTTAAAACNCNAGCTTGAAGGCNGNGNCNAGTTNTCNGTGGNGGGGAAGCGAGN
rJMSF050A13+          AGCTCNTTTAAAACGCNAGCNTGAAGGCNGNGACNAGTTNTCNGNGGNGGGGAAGCGAGN
                      ____________________________________________________________
consensus             AGCTCNTTTAAAACGCNAGCTTGAAGGCNGNGACNAGTTNTCNGTGGNGGGGAAGCGAGN
 
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rJMSF052B09+          GTCTNTAACNTGAAAGAGTGGCTGAAAAGAATTTTGCTTNGTAAGGNGATAGCTGTACCN
rJMSF050A13+          GTCTCTAACNTGAAAGAGNGGCTGAAAAGAATTTTGCTTNGTAAGGNGATAGCTGTACCN
                      ____________________________________________________________
consensus             GTCTCTAACNTGAAAGAGTGGCTGAAAAGAATTTTGCTTNGTAAGGNGATAGCTGTACCN
 
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rJMSF052B09+          CNATGTACCTTGNTGNTGNGNCTAGTTTGGGNGTGATATACCNAATTAAACCNTAATGNG
rJMSF050A13+          CNATGTACNTTGTTGCTGNGACTAGTTTGGGTGTGATATACCNAATTNAACCNTAATGNG
                      ____________________________________________________________
consensus             CNATGTACCTTGTTGCTGNGACTAGTTTGGGTGTGATATACCNAATTAAACCNTAATGNG
 
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rJMSF052B09+          GCNAGTCNTGATTTATTCCCCNGTAGTCCCTTTGTTGCNGATTTGTTTTTGGCTGNGAAT
rJMSF050A13+          GCNAGTCNTGATTTATTCCCCNGTAGTCCCTTTGTTGCNGATTTGTTTTTGGCTGNGAAT
                      ____________________________________________________________
consensus             GCNAGTCNTGATTTATTCCCCNGTAGTCCCTTTGTTGCNGATTTGTTTTTGGCTGNGAAT
 
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rJMSF052B09+          TGGATATATAGCTACNGAACNAAACCGNGATCTTCCTNTGCNTCNTTGNTTTTTTTTTTG
rJMSF050A13+          TGGATATATAGCTACCGAACNAAACCGNGATCTTCCTNTGCNTCCTTGTTTTTTTTTTTG
                      ____________________________________________________________
consensus             TGGATATATAGCTACCGAACNAAACCGNGATCTTCCTNTGCNTCCTTGTTTTTTTTTTTG
 
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rJMSF052B09+          TTTATTTTTAATAGTAT                                           
rJMSF050A13+          TTTATTTTTAATAGTATCTTCGGAGGTAAGGAATNGGTTTATTTNTCGTTGNAGATTAAA
                      ____________________________________________________________
consensus             TTTATTTTTAATAGTATCTTCGGAGGTAAGGAATNGGTTTATTTNTCGTTGNAGATTAAA