Contig 014120:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003G12Sequence287003895 (3)ref|XP_004238864.1|2e-14PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Solanum 669014120 (2)ref|XP_004238864.1|3e-14PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Solanum
JMSF049J04Sequence744003895 (3)ref|XP_009610712.1|2e-18PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog isoform X753014120 (2)ref|XP_004238864.1|4e-14PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Solanum

Alignment

This contig is upended


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rJMSF049J04+                                     ATTTCCATTTTCGGGCCTGCTCCAGTCGACAAT
                      ____________________________________________________________
consensus                                        ATTTCCATTTTCGGGCCTGCTCCAGTCGACAAT
 
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rJMSF003G12+                                                    GCTCTTCTCCAATGGAGT
rJMSF049J04+          TAGAATGCTACTTTGTGAAAATTAGGGCTTTCTCATATATTTGCTCTTCTCCAATGGAGT
                      ____________________________________________________________
consensus             TAGAATGCTACTTTGTGAAAATTAGGGCTTTCTCATATATTTGCTCTTCTCCAATGGAGT
 
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rJMSF003G12+          AGAAGATGGATACATATTGAAGTAGATGAATTGAGGTTGGGACAAGAGGGTGACGTGGAG
rJMSF049J04+          AGAAGATGGATACATATTGAAGTAGATGAATTGAGGTTGGGACAAGAGGGTGACGTGGAG
                      ____________________________________________________________
consensus             AGAAGATGGATACATATTGAAGTAGATGAATTGAGGTTGGGACAAGAGGGTGACGTGGAG
 
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rJMSF003G12+          GAAGCAGATTTTGGTGTTTAGCTTTAATTAGGCCGTGGCATGCACCTTTTCAATTTTGTG
rJMSF049J04+          GAAGCAGATTTTGGTGTTTAGCTTTAATTAGGCCGTGGCATGCACCTTTTCAATTTTGTG
                      ____________________________________________________________
consensus             GAAGCAGATTTTGGTGTTTAGCTTTAATTAGGCCGTGGCATGCACCTTTTCAATTTTGTG
 
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rJMSF003G12+          TCCAACTTGGTACAAGTTGGCCAGAGATTGGTCATTGAACTTGATCTGCATAGTGTGACG
rJMSF049J04+          TCCAACTTGGTACAAGTTGGCCAGAGATTGGTCATTGAACTTGATCTGCATAGTGTGACG
                      ____________________________________________________________
consensus             TCCAACTTGGTACAAGTTGGCCAGAGATTGGTCATTGAACTTGATCTGCATAGTGTGACG
 
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rJMSF003G12+          AGTAGAAGTTTGTGATAAGGTGAGAGATACTTGAAGGTATGCACCAATTAGACTGCATAG
rJMSF049J04+          AGTAGAAGTTTGTGATAAGGTGAGAGATACTTGAAGGTATGCACCAATTAGACTGCATAG
                      ____________________________________________________________
consensus             AGTAGAAGTTTGTGATAAGGTGAGAGATACTTGAAGGTATGCACCAATTAGACTGCATAG
 
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rJMSF003G12+          TGAGCTGTGTGTTTGTCTCTTTCAGATGGTCATATCACTTCTTCTTTTACAATAGAAGGT
rJMSF049J04+          TGAGCTGTGTGTTTGTCTCTTTCAGATGGTCATATCACTTCTTCTTTTACAATAGAAGGT
                      ____________________________________________________________
consensus             TGAGCTGTGTGTTTGTCTCTTTCAGATGGTCATATCACTTCTTCTTTTACAATAGAAGGT
 
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rJMSF003G12+          TGAAGCGCATTGTCAGCTTCCGTTTCAGCTGTGTGAGCAACTTGGCTTTGGTAGATGGAT
rJMSF049J04+          TGAAGCGCATTGTCAGCTTCCGTTTCAGCTGTGTGAGCAACTTGGCTTTGGTAGATGGAT
                      ____________________________________________________________
consensus             TGAAGCGCATTGTCAGCTTCCGTTTCAGCTGTGTGAGCAACTTGGCTTTGGTAGATGGAT
 
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rJMSF003G12+          TGAATCACGAGGAAGATGGAGAGATATTCGATGGCATGGACATGTGAAGCAACAGAGTGT
rJMSF049J04+          TGAATCACGAGGAAGATGGAGAGATATTCGATGGCATGGACATGTGAAGCAACAGAGTGT
                      ____________________________________________________________
consensus             TGAATCACGAGGAAGATGGAGAGATATTCGATGGCATGGACATGTGAAGCAACAGAGTGT
 
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rJMSF003G12+          TTAGTGCTCTGCAGTGGTGCTGTTTCAGGCCCGAAACTGTGAATGTATATAATGCCATCA
rJMSF049J04+          TTAGTGCTCTGCAGTGGTGCTGTTTCAGGCCCGAAACTGTGAATGTATATAATGCCATCA
                      ____________________________________________________________
consensus             TTAGTGCTCTGCAGTGGTGCTGTTTCAGGCCCGAAACTGTGAATGTATATAATGCCATCA
 
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rJMSF003G12+          TGAGTTATTAGGAGATCGATCGTGGTTACTAATCAGACAACTTTCTAATCCGACATTTAA
rJMSF049J04+          TGAGTTATTAGGAGATCGATCGTGGTTACTAATCAGACAACTTTCTAATCCGACATTTAA
                      ____________________________________________________________
consensus             TGAGTTATTAGGAGATCGATCGTGGTTACTAATCAGACAACTTTCTAATCCGACATTTAA
 
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rJMSF003G12+          CTTGTGTTAATATGTATGAAGATCACGAACAAATGGAGAGTAATAGTTGCAAATTCTCTT
rJMSF049J04+          CTTGTGTTAATATGTATGAAGATCACGAACAAATGGAGAGTAATAGTTGCAAATTCTCTT
                      ____________________________________________________________
consensus             CTTGTGTTAATATGTATGAAGATCACGAACAAATGGAGAGTAATAGTTGCAAATTCTCTT
 
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rJMSF003G12+          TGCTTTTGTATCTGCTCTCTNCTAGTGTCTCGTATGTCATTGAANAAAATT         
rJMSF049J04+          TGCTTTTGTATCTGCTCTCTACTAGTGTCTCGTATGTCATTGAATAAAATTTGGGACCTA
                      ____________________________________________________________
consensus             TGCTTTTGTATCTGCTCTCTACTAGTGTCTCGTATGTCATTGAATAAAATTTGGGACCTA