| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF014M11 | Sequence | 470 | 010933 (3) | emb|CDP14272.1| | 1e-58 | unnamed protein product [Coffea canephora] | 805 | 014114 (3) | emb|CDP14272.1| | 2e-141 | unnamed protein product [Coffea canephora] |
| JMSF047J15 | Sequence | 694 | 010933 (3) | ref|XP_009587250.1| | 2e-112 | PREDICTED: DNA replication licensing factor MCM5 [Nicotiana tomentosiformis] | 805 | 014114 (3) | emb|CDP14272.1| | 1e-127 | unnamed protein product [Coffea canephora] |
| JMSF050N14 | Sequence | 636 | 010933 (3) | ref|XP_009587250.1| | 5e-97 | PREDICTED: DNA replication licensing factor MCM5 [Nicotiana tomentosiformis] | 751 | 014114 (3) | emb|CDP14272.1| | 4e-127 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF014M11+ ACNAGA
____________________________________________________________
consensus ACNAGA
. : . : . : . : . : . :
rJMSF014M11+ TAACATCGATTTGCAGACAACAATTCTTTCAAGATTTGATATGATTTNCATTGTAAAAGA
rJMSF050N14+ A
rJMSF047J15+ AAAGA
____________________________________________________________
consensus TAACATCGATTTGCAGACAACAATTCTTTCAAGATTTGATATGATTTNCATTGTAAAAGA
. : . : . : . : . : . :
rJMSF014M11+ CATCAGGATGTACAGTCAAGACAAGAATATTGCTAGCCATATTGTAAGAGTTCATGTATC
rJMSF050N14+ CATCAGGATGTACAGTCAAGACAAGAATATTGCTAGCCATATTGTAAGAGTTCATGTATC
rJMSF047J15+ CATCAGGATGTNCAGTCAAGACAAGAATATTGCTAGCCATATTGTAAGAGTTCATGTATC
____________________________________________________________
consensus CATCAGGATGTACAGTCAAGACAAGAATATTGCTAGCCATATTGTAAGAGTTCATGTATC
. : . : . : . : . : . :
rJMSF014M11+ TGCTGATGCAAGCTCGGGTGACCCAAGAACTACTAAGGAGGATAACTGGTTGAAAAGGTA
rJMSF050N14+ TGCTGATGCAAGCTCGGGTGACCCAAGAACTACTAAGGAGGATAACTGGTTGAAAAGGTA
rJMSF047J15+ TGCTGATGCAAGCTCGGGTGACCCAAGAACTACTAAGGAGGATAACTGGTTGAAAAGGTA
____________________________________________________________
consensus TGCTGATGCAAGCTCGGGTGACCCAAGAACTACTAAGGAGGATAACTGGTTGAAAAGGTA
. : . : . : . : . : . :
rJMSF014M11+ TATACACTATTGTCGAACTATGTGTTACCCCAGGCTATCAGATTCAGCAGCTTCAATGCT
rJMSF050N14+ TATACACTATTGTCGAACTATGTGTTACCCCAGGCTATCAGATTCAGCAGCTTCAATGCT
rJMSF047J15+ TATACACTATTGTCGAACTATGTGTTACCCCAGGCTATCAGATTCAGCAGCTTCAATGCT
____________________________________________________________
consensus TATACACTATTGTCGAACTATGTGTTACCCCAGGCTATCAGATTCAGCAGCTTCAATGCT
. : . : . : . : . : . :
rJMSF014M11+ GCAGGAGAGTCATGTCAAAATTAGACAGGATATGAGGCGGCAAGCAAATGAAGCTGGGGA
rJMSF050N14+ GCAGGAGAGTTATGTCAAAATTAGACAGGATATGAGGCGGCAAGCAAATGAAGCTGGGGA
rJMSF047J15+ GCAGGAGAGTTATGTCAAAATTAGACAGGATATGAGGCGGCAAGCAAATGAAGCTGGGGA
____________________________________________________________
consensus GCAGGAGAGTTATGTCAAAATTAGACAGGATATGAGGCGGCAAGCAAATGAAGCTGGGGA
. : . : . : . : . : . :
rJMSF014M11+ GGCAGCTGCAATACCAATTACTGTGAGGCAACTTGAAGCTATTGTAAGGCTGAGTGAAGC
rJMSF050N14+ GGCAGCTGCAATACCAATTACTGTGAGGCAACTTGAAGCTATTGTAAGGCTGAGTGAAGC
rJMSF047J15+ GGCAGCTGCAATACCAATTACTGTGAGGCAACTTGAAGCTATTGTAAGGCTGAGTGAAGC
____________________________________________________________
consensus GGCAGCTGCAATACCAATTACTGTGAGGCAACTTGAAGCTATTGTAAGGCTGAGTGAAGC
. : . : . : . : . : . :
rJMSF014M11+ TCTTGCAAGAATGAGACTTTCCCAAGTAGCAAACGAGAACCATGTGTCGGAAGCTATTAG
rJMSF050N14+ TCTTGCAAGAATGAGACTTTCCCAAGTAGCAAACGAGAACCATGTGTCGGAAGCTATTAG
rJMSF047J15+ TCTTGCAAGAATGAGACTTTCCCAAGTAGCAAACGAGAACCATGTGTCGGAAGCTATTAG
____________________________________________________________
consensus TCTTGCAAGAATGAGACTTTCCCAAGTAGCAAACGAGAACCATGTGTCGGAAGCTATTAG
. : . : . : . : . : . :
rJMSF014M11+ ACTATTCAACAATTCTACCATGGATGCTGCAAAATCTGGAATTAACCAACACATAAATCT
rJMSF050N14+ ACTATTCAACAATTCTACCATGGATGCTGCAAAATCTGGAATTAACCAACACATAAATCT
rJMSF047J15+ ACTATTCAACAATTCTACCATGGATGCTGCAAAATCTGGAATTAACCAACACATAAATCT
____________________________________________________________
consensus ACTATTCAACAATTCTACCATGGATGCTGCAAAATCTGGAATTAACCAACACATAAATCT
. : . : . : . : . : . :
rJMSF014M11+ GACGCCCGAGATGGCAAATGAGATAAAGCAAGCAGAAACCCAGATAAAGAGAAGGATGGG
rJMSF050N14+ GACGCCCGAGATGGCAAATGAGATAAAGCAAGCAGAAACCCAGATAAAGAGAAGGATGGG
rJMSF047J15+ GACGCCCGAGATGGCAAATGAGATAAAGCAAGCAGAAACCCAGATAAAGAGAAGGATGGG
____________________________________________________________
consensus GACGCCCGAGATGGCAAATGAGATAAAGCAAGCAGAAACCCAGATAAAGAGAAGGATGGG
. : . : . : . : . : . :
rJMSF014M11+ AATCGGGAGCCACATATCCGAGAGACGGCTAATTGATGAGCTTTCTAGGATGGGCATGAA
rJMSF050N14+ AATCGGGAGCCACATATCCGAGAGACGGCTAATTGATGAGCTTTCTAGGATGGGCATGAA
rJMSF047J15+ AATCGGGAGCCACATATCCGAGAGACGGCTAATTGATGAGCTTTCTAGGATGGGCATGAA
____________________________________________________________
consensus AATCGGGAGCCACATATCCGAGAGACGGCTAATTGATGAGCTTTCTAGGATGGGCATGAA
. : . : . : . : . : . :
rJMSF014M11+ TGAATCTATTATAAGAAGAGCTCTGTTGATTATGCATCAAAGAGACGAGGTTGAGTACAA
rJMSF050N14+ TGAATCTATTATAAGAAGAGCTCTGTTGATTATGCATCAAAGAGACGAGGTAGAGTACAA
rJMSF047J15+ TGAATCTATTATAAGAAGAGCTCTGTTGATTATGCATCAAAGAGACGAGGTTGAGTACAA
____________________________________________________________
consensus TGAATCTATTATAAGAAGAGCTCTGTTGATTATGCATCAAAGAGACGAGGTTGAGTACAA
. : . : . : . : . : . :
rJMSF014M11+ ACGAGAAAGGAGGATCATAGTCCGCAAAGCTTGATCCTTGCTGCTGCCTGGCCTGCTTTC
rJMSF050N14+ ACGAGAAAGGAGGATCATAGTCCGCAAAGCTTGATCCTTGCTGCTGCCTGGCCTGCTTTC
rJMSF047J15+ ACGAGAAAGGAGGATCATAGTCCGCAAAGCTTGATCCTTGCTGCTGCCTGGCCTGCTTTC
____________________________________________________________
consensus ACGAGAAAGGAGGATCATAGTCCGCAAAGCTTGATCCTTGCTGCTGCCTGGCCTGCTTTC
. : . : . : . : . : . :
rJMSF014M11+ TTCCATCTATGTATTGTTACAAAGATATATAGCATCTGATGATGATGTTTATGTTGCCAT
rJMSF050N14+ TTCCATCTATGTATTGTTACAAAGATATATAGCATCTGATGATGATGTTTATGTTGCCAT
rJMSF047J15+ TTCCATCTATGTATTGTTACAAAGATATATAGCATCTGATGATGATGTTTATGTTGCCAT
____________________________________________________________
consensus TTCCATCTATGTATTGTTACAAAGATATATAGCATCTGATGATGATGTTTATGTTGCCAT
. : . : . : . : . : . :
rJMSF014M11+ AATCACATTGGGGCAATTT
rJMSF050N14+ AATCACATTGGGGCAATTTGTTTGTAAAAT
rJMSF047J15+ AATCACATTGGGGCAATTTGTTTGTAAAATGTTTAGATTCATAATGACAAGTATCAACCT
____________________________________________________________
consensus AATCACATTGGGGCAATTTGTTTGTAAAATGTTTAGATTCATAATGACAAGTATCAACCT