Contig 014110:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF047F11Sequence683014110 (2)ref|XP_007017670.1|2e-93JHL18I08.10 protein isoform 1 [Theobroma cacao] gb|EOY14895.1| JHL18I08.10 prote728014110 (2)ref|XP_009804853.1|2e-103PREDICTED: transcription initiation factor IIF subunit beta [Nicotiana sylvestr

Alignment

This contig is upended


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JMSF047F11-                                                               GACAGAAA
                      ____________________________________________________________
consensus                                                                 GACAGAAA
 
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JMSF047F11-           GCACAATTCGAGGGAGAATCGGGAATGGAAGACGATCAAACCACAGCCGTGGACACGGCC
                      ____________________________________________________________
consensus             GCACAATTCGAGGGAGAATCGGGAATGGAAGACGATCAAACCACAGCCGTGGACACGGCC
 
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JMSF047F11-           AAGGCCGACAAATTTGTGTGGCTGATGAAATGTCCTCTACTAGTCTCCAGATCATGGCAG
                      ____________________________________________________________
consensus             AAGGCCGACAAATTTGTGTGGCTGATGAAATGTCCTCTACTAGTCTCCAGATCATGGCAG
 
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JMSF047F11-           TCTCAAGCCACCGCCTCCTCATCAGACGCGCCGCCGGTAGCTAAAGTTGTCGTTTCTCTC
                      ____________________________________________________________
consensus             TCTCAAGCCACCGCCTCCTCATCAGACGCGCCGCCGGTAGCTAAAGTTGTCGTTTCTCTC
 
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JMSF047F11-           GATCTTCTTCCCAAGGATCCGGACGAACCCGTTGATAATTCTCCCGAATTTGCAATGGAA
rJMSF047F11+                                                              CAATGGAA
                      ____________________________________________________________
consensus             GATCTTCTTCCCAAGGATCCGGACGAACCCGTTGATAATTCTCCCGAATTTGCAATGGAA
 
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JMSF047F11-           ATGATTGGCAATGAAGGTGGGAACGCCCCAAAAAGTTACTGCTTGAATATGACCAATGAC
rJMSF047F11+          ATGATTGGCAATGAAGGTGGGAACGCCCCAAAAAGTTACTGCTTGAATATGACCAATGAC
                      ____________________________________________________________
consensus             ATGATTGGCAATGAAGGTGGGAACGCCCCAAAAAGTTACTGCTTGAATATGACCAATGAC
 
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JMSF047F11-           TTCGTCCCAATGTGTATATTCTCACAGTCAAGTCAAGGAAAGGTTGCCACGGAAGGAAAA
rJMSF047F11+          TTCGTCCCAATGTGTATATTCTCACAGTCAAGTCAAGGAAAGGTTGCCACGGAAGGAAAA
                      ____________________________________________________________
consensus             TTCGTCCCAATGTGTATATTCTCACAGTCAAGTCAAGGAAAGGTTGCCACGGAAGGAAAA
 
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JMSF047F11-           GTTGAGTATAAATTTGACATGAAGCCAGCCAATCGGAATATGGAAGAGTGCAGAAAACTG
rJMSF047F11+          GTTGAGTATAAATTTGACATGAAGCCAGCCAATCGGAATATGGAAGAGTGCAGAAAACTG
                      ____________________________________________________________
consensus             GTTGAGTATAAATTTGACATGAAGCCAGCCAATCGGAATATGGAAGAGTGCAGAAAACTG
 
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JMSF047F11-           TGTCGTGAAAGAACCAACAAATCAATGGTCAAGAACAGGCAAATTCAGGTCATTGATAAT
rJMSF047F11+          TGTCGTGAAAGAACCAACAAATCAATGGTCAAGAACAGGCAAATTCAGGTCATTGATAAT
                      ____________________________________________________________
consensus             TGTCGTGAAAGAACCAACAAATCAATGGTCAAGAACAGGCAAATTCAGGTCATTGATAAT
 
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JMSF047F11-           GATCGTGGAGTAAACATGAGGCCCATGCCTGGAATGTTTGGAGTGATTGCATCCACTTCT
rJMSF047F11+          GATCGTGGAGTAAACATGAGGCCCATGCCTGGAATGTTTGGAGTGATTGCATCCACTTCT
                      ____________________________________________________________
consensus             GATCGTGGAGTAAACATGAGGCCCATGCCTGGAATGTTTGGAGTGATTGCATCCACTTCT
 
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JMSF047F11-           AAGGAGAAGAAGAAGCCAGCTCCAGTTAAGGCTCCTGAAGTCAAAAGAACTAGGAGGGAC
rJMSF047F11+          AAGGAGAAGAAGAAGCCAGCTCCAGTTAAGGCTCCTGAAGTCAAAAGAACTAGGAGGGAC
                      ____________________________________________________________
consensus             AAGGAGAAGAAGAAGCCAGCTCCAGTTAAGGCTCCTGAAGTCAAAAGAACTAGGAGGGAC
 
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JMSF047F11-           CGTGGTGAACTGGAAGATATCATGTTTAAACTTTTTGAAAGACAACCTAATTGGACCTTG
rJMSF047F11+          CGTGGTGAACTGGAAGATATCATGTTTAAACTTTTTGAAAGACAACCTAATTGGACCTTG
                      ____________________________________________________________
consensus             CGTGGTGAACTGGAAGATATCATGTTTAAACTTTTTGAAAGACAACCTAATTGGACCTTG
 
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JMSF047F11-           AAGAATCTAGTCCTA                                             
rJMSF047F11+          AAGAATCTAGTCCTAGAGACAGATCAACCTGCGCAATTTCTGAAGGAGATACTAAATGAG
                      ____________________________________________________________
consensus             AAGAATCTAGTCCTAGAGACAGATCAACCTGCGCAATTTCTGAAGGAGATACTAAATGAG
 
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rJMSF047F11+          CTGTGTGTATACAATAAGAGGGGAGCAAACCAAGGTACTTACGAGCTAAAGCCTGAGTAC
                      ____________________________________________________________
consensus             CTGTGTGTATACAATAAGAGGGGAGCAAACCAAGGTACTTACGAGCTAAAGCCTGAGTAC
 
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rJMSF047F11+          AAGAAATCTGCAGAGGATGCAGGTGCTGAATAATAGCCTTCTTTCTCTGACTGTATATTA
                      ____________________________________________________________
consensus             AAGAAATCTGCAGAGGATGCAGGTGCTGAATAATAGCCTTCTTTCTCTGACTGTATATTA
 
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rJMSF047F11+          GACTTGCGAAGCAAGAATGAGTTGTTAATCATGAGTTCCAGATGATCAGAGGTATACTTT
                      ____________________________________________________________
consensus             GACTTGCGAAGCAAGAATGAGTTGTTAATCATGAGTTCCAGATGATCAGAGGTATACTTT
 
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rJMSF047F11+          AGTTTTTCAAGAGTCAATTGTATTGCAGTGGTGGATATTGTTGTTTATCTGGAAAAGAGG
                      ____________________________________________________________
consensus             AGTTTTTCAAGAGTCAATTGTATTGCAGTGGTGGATATTGTTGTTTATCTGGAAAAGAGG