Contig 014109:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002I13Sequence454012168 (2)ref|XP_009623304.1|9e-07PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230698014109 (3)emb|CDP10226.1|5e-108unnamed protein product [Coffea canephora]
JMSF034P19Sequence182014109 (3)ref|XP_006473994.1|2e-19PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230
JMSF047E10Sequence706012168 (2)ref|XP_009623304.1|6e-09PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230770014109 (3)emb|CDP10226.1|8e-117unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF047E10+                    AGCACAGACACCTGGGAACTGCAGGACGACAGTAATGGTATTCAGAATGT
                      ____________________________________________________________
consensus                       AGCACAGACACCTGGGAACTGCAGGACGACAGTAATGGTATTCAGAATGT
 
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rJMSF002I13+            GGTCCGAGGGATTGTTAACCACTTGGGTATTCAGACATAAAATTGCACTTGGCACGGC
rJMSF047E10+          CGGGTCCGAGGGATTGTTAACCACTTGGGTATTCAGACATAAAATTGCACTTGGCACGGC
                      ____________________________________________________________
consensus             CGGGTCCGAGGGATTGTTAACCACTTGGGTATTCAGACATAAAATTGCACTTGGCACGGC
 
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rJMSF002I13+          AAGAGCCCTCGCGTTTCTCCATCATGGCTGCTCGCCTCCAATCATACACCGAGATGTCAA
rJMSF047E10+          AAGAGCCCTCGCGTTTCTCCATCATGGCTGCTCGCCTCCAATCATACACCGAGATGTCAA
                      ____________________________________________________________
consensus             AAGAGCCCTCGCGTTTCTCCATCATGGCTGCTCGCCTCCAATCATACACCGAGATGTCAA
 
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rJMSF002I13+          GGCTAGCAGCGTGTATCTTGACTGTAGCCTCGAGCCCAGGCTTTCTGATTTTGGACTAGC
rJMSF047E10+          GGCTAGCAGCGTGTATCTTGACTGTAGCCTCGAGCCCAGGCTTTCTGATTTTGGACTAGC
                      ____________________________________________________________
consensus             GGCTAGCAGCGTGTATCTTGACTGTAGCCTCGAGCCCAGGCTTTCTGATTTTGGACTAGC
 
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rJMSF002I13+          TAAAATCTTCGGGAATGGTCTTGAAGATGAGATTGCTCGGGGTTCACCTGGATACATACC
rJMSF047E10+          TAAAATCTTCGGGAATGGTCTTGAAGATGAGATTGCTCGGGGTTCACCTGGATACATACC
                      ____________________________________________________________
consensus             TAAAATCTTCGGGAATGGTCTTGAAGATGAGATTGCTCGGGGTTCACCTGGATACATACC
 
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rJMSF002I13+          ACCCGAGTTTCTCCAACCAGCTGAGACAAGCTCCCCTAAAACCCCAACTCCAAAATCCGA
rJMSF047E10+          ACCCGAGTTTCTCCAACCAGCTGAGACAAGCTCCCCTAAAACCCCAACTCCAAAATCCGA
                      ____________________________________________________________
consensus             ACCCGAGTTTCTCCAACCAGCTGAGACAAGCTCCCCTAAAACCCCAACTCCAAAATCCGA
 
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rJMSF034P19+                                                 TGGTAAAAAACCCNNTGGAGA
rJMSF002I13+          TGTCTATGGATTTGGTGTCATTCTCTTCGAGCTACTAACTGGTAAAAAACCCGTTGGAGA
rJMSF047E10+          TGTCTATGGATTTGGTGTCATTCTCCTCGAGCTACTAACTGGTAAAAAACCCGTTGGAGA
                      ____________________________________________________________
consensus             TGTCTATGGATTTGGTGTCATTCTCTTCGAGCTACTAACTGGTAAAAAACCCGTTGGAGA
 
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rJMSF034P19+          TGATTACCCAGAAGAGAAAGACGGGAATTTGGTTATTTGGGTGAGAAGNTTANTGAGGAA
rJMSF002I13+          TGATTACCCAGAAGAGAAAGACGGGAATTTGGTTATTTGGGTGAGAGGATTAGTGAGGAA
rJMSF047E10+          TGATTACCCAGAAGAGAAAGACGGGAATTTGGTTATTTGGGTGAGAGGATTAGTGAGGAA
                      ____________________________________________________________
consensus             TGATTACCCAGAAGAGAAAGACGGGAATTTGGTTATTTGGGTGAGAGGATTAGTGAGGAA
 
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rJMSF034P19+          AAACCAGGGATTAAGANCTANTGATCCAAAAATCCNTGGANCAGCACCAGAAACACAGAT
rJMSF002I13+          AAACCAGGGATTAAGAGCTATTGATCCAAAAATCCATGGAACAGCACCAGAAACACAGAT
rJMSF047E10+          AAACCAGGGATTAAGAGCTATTGATCCAAAAATCCATGGAACAGCACCAGAAACACAGAT
                      ____________________________________________________________
consensus             AAACCAGGGATTAAGAGCTATTGATCCAAAAATCCATGGAACAGCACCAGAAACACAGAT
 
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rJMSF034P19+          GGAAGAAGCCNTGAAGATTGGTTATNTANGCACNGCAGACT                   
rJMSF002I13+          GGAAGAAGCCTTGAAGATTGGTTATTTATGCACAGCAGACTCTCCTTCAAAGCGGCCAAG
rJMSF047E10+          GGAAGAAGCCTTGAAGATTGGTTATTTATGCACAGCAGACTCTCCTTCAAAGCGGCCAAG
                      ____________________________________________________________
consensus             GGAAGAAGCCTTGAAGATTGGTTATTTATGCACAGCAGACTCTCCTTCAAAGCGGCCAAG
 
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rJMSF002I13+          TATGCAGCAGGTAGTTGGACTTCTCAAGGATATCGAGAGCATTACAAAGCAATGAGGACC
rJMSF047E10+          TATGCAGCAGGTAGTTGGACTTCTCAAGGATATCGAGAGCATTACAAAGCAATGAGGACC
                      ____________________________________________________________
consensus             TATGCAGCAGGTAGTTGGACTTCTCAAGGATATCGAGAGCATTACAAAGCAATGAGGACC
 
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rJMSF002I13+          GATCGAGATCTAAGTAATCTCGACTTCATAATCCTCCTCATCTGTCTGCTTTCCATTTTG
rJMSF047E10+          GATCGAGATCTAAGTAATCTCGACTTCATAATCCTCCTCATCTGTCTGCTTTCCATTTTG
                      ____________________________________________________________
consensus             GATCGAGATCTAAGTAATCTCGACTTCATAATCCTCCTCATCTGTCTGCTTTCCATTTTG
 
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rJMSF002I13+          AGTTCCCATAGCGGGGACTGTACAGTACTCCAAGCTTTTT                    
rJMSF047E10+          AGTTCCCATAGCGGGGACTGTACAGTACTCCAAGCTTTTTGTTTGCCATGTTTCTCATAT
                      ____________________________________________________________
consensus             AGTTCCCATAGCGGGGACTGTACAGTACTCCAAGCTTTTTGTTTGCCATGTTTCTCATAT