| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF003K13 | Sequence | 406 | 009178 (2) | ref|XP_006367266.1| | 6e-13 | PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic | 719 | 014107 (3) | ref|XP_009776250.1| | 1e-60 | PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic |
| JMSF032A01 | Sequence | 700 | 009178 (2) | ref|XP_009602546.1| | 2e-54 | PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic | 731 | 014107 (3) | ref|XP_009776250.1| | 1e-57 | PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic |
| JMSF046O22 | Sequence | 672 | 014107 (3) | ref|XP_009776250.1| | 7e-41 | PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF003K13+ TGTGAAGGTCTAATACAGAATCG
rJMSF032A01+ ATACAGAATCG
____________________________________________________________
consensus TGTGAAGGTCTAATACAGAATCG
. : . : . : . : . : . :
rJMSF003K13+ CCATCAGAAAGAAGGGCAACTTACTTCCCAGAATAGGATTGATCTAGATCCTAAAAGTCT
rJMSF032A01+ CCATCAGAAAGNAGGGCAACTTACTTCCCAGAATAGGATTGATCTAGATCCTAAAAGTCT
rJMSF046O22+ TCCTAAAAGTCT
____________________________________________________________
consensus CCATCAGAAAGAAGGGCAACTTACTTCCCAGAATAGGATTGATCTAGATCCTAAAAGTCT
. : . : . : . : . : . :
rJMSF003K13+ GCTTCTTGAGAAAGTTGCTGAACACTTGCAGAAGAGTAATGCTGGAAGCCTATCTATTGA
rJMSF032A01+ GCTTCTTGAGAAAGTTGCTGAACACTTGCAGAAGAGTAATGCTGGAAGCCTATCTATTGA
rJMSF046O22+ GCTTCTTGAGAAAGTTGCTGAACACTTGCAGAAGAGTAATGCTGGAAGCCTATCTATTGA
____________________________________________________________
consensus GCTTCTTGAGAAAGTTGCTGAACACTTGCAGAAGAGTAATGCTGGAAGCCTATCTATTGA
. : . : . : . : . : . :
rJMSF003K13+ TCTTCAG-AAACTTTCTAAGGTTGAAGCTCGCACATTGGTTCTTGCAGTTCTGAGAATGA
rJMSF032A01+ TCTTCAG-AAACTTTCTAAGGTTGAAGCTCGCACATTGGTTCTTGCAGTTCTGAGAATGA
rJMSF046O22+ TCTTCAGAAAACTTTCTAAGGTTGAAGCTCGCACATTGGTTCTTGCAGTTCTGAGAATGA
____________________________________________________________
consensus TCTTCAG-AAACTTTCTAAGGTTGAAGCTCGCACATTGGTTCTTGCAGTTCTGAGAATGA
. : . : . : . : . : . :
rJMSF003K13+ TGAAAGAGACATACAATCCAGGAGATTTAATTACAGATGATGTGCAGATCATATTAGGAG
rJMSF032A01+ TGAAAGAGACATACAATCCAGGAGATTTAATTACAGATGATGTGCAGATCATATTAGGAG
rJMSF046O22+ TGAAAGAGACATACAATCCAGGAGATTTAATTACAGATGATGTGCAGATCATATTAGGAG
____________________________________________________________
consensus TGAAAGAGACATACAATCCAGGAGATTTAATTACAGATGATGTGCAGATCATATTAGGAG
. : . : . : . : . : . :
rJMSF003K13+ TAGATCAAGTAGGCACACCTGCGGCCAATCACGAAAGTGGAGTCAAGGAAACAATAATCG
rJMSF032A01+ TAGATCAAGTAGGCACACCTGCGGCCAATCACGAAAGTGGAGTCAAGGAAACAATAATCG
rJMSF046O22+ TAGATCAAGTAGGCACACCTGCGGCCAATCACGAAAGTGGAGTCAAGGAAACAATAATCG
____________________________________________________________
consensus TAGATCAAGTAGGCACACCTGCGGCCAATCACGAAAGTGGAGTCAAGGAAACAATAATCG
. : . : . : . : . : . :
rJMSF003K13+ AACTCTTACAACATGATTTGCGTCTTGAGGTTGTTTCAACAGGATCCAAAACCGAAACCG
rJMSF032A01+ AACTCTTGCAACATGATTTGCGTCTTGAGGTTGTTTCAACAGGATCCAAAACCGAAACCG
rJMSF046O22+ AACTCTTGCAACATGATTTGCGTCTTGAGGTTGTTTCAACAGGATCCAAAACCGAAACCG
____________________________________________________________
consensus AACTCTTGCAACATGATTTGCGTCTTGAGGTTGTTTCAACAGGATCCAAAACCGAAACCG
. : . : . : . : . : . :
rJMSF003K13+ ACAGAAATTATGGCGAGATAAACTCTGCAGATGAATCTTCAGACACAGAGGAGAACAGGG
rJMSF032A01+ ACAGAAATTATGGCGAGATAAACTCTGCAGATGAATCTTCAGACACAGAGGAGAACAGGG
rJMSF046O22+ ACAGAAATTATGGCGAGATAAACTCTGCAGATGAATCTTCAGACACAGAGGAGAACAGGG
____________________________________________________________
consensus ACAGAAATTATGGCGAGATAAACTCTGCAGATGAATCTTCAGACACAGAGGAGAACAGGG
. : . : . : . : . : . :
rJMSF003K13+ AAAGCGGTGTTTTGCCATCACAATCGGATTTTCCTACAAGGAGACCTGCAGTTCTACAAA
rJMSF032A01+ AAAGCGGTGTTTTGCCATCACAATCGGATTTTCCTACAAGGAGACCTGCAGTTCTACAAA
rJMSF046O22+ AAAGCGGTGTTTTGCCATCACAATCGGATTTTCCTACAAGGAGACCTGCAGTTCTACAAA
____________________________________________________________
consensus AAAGCGGTGTTTTGCCATCACAATCGGATTTTCCTACAAGGAGACCTGCAGTTCTACAAA
. : . : . : . : . : . :
rJMSF003K13+ AGTTGAAGATAACTAAGGAATCATTGGACTCTTGGCTACAGAGAATAATGGATGGTTCTG
rJMSF032A01+ AGTTGAAGATAACTAAGGAATCATTGGACTCTTGGCTACAGAGAATAATGGATGGTTCTG
rJMSF046O22+ AGTTGAAGATAACTAAGGAATCATTGGACTCTTGGCTACAGAGAATAATGGATGGTTCTG
____________________________________________________________
consensus AGTTGAAGATAACTAAGGAATCATTGGACTCTTGGCTACAGAGAATAATGGATGGTTCTG
. : . : . : . : . : . :
rJMSF003K13+ AAAGGCAGTCCCCTACATCTGATATGTGAAAAACCATTCTGTAAGATTCTTTTTGCCCTT
rJMSF032A01+ AAAGGCAGTCCCCTACATCTGATATGTGAAAAACCATTCTGTAAGATTCTTTTTGCCCTT
rJMSF046O22+ AAAGGCAGTCCCCTACATCTGATATGTGAAAAACCATTCTGTAAGATTCTTTTTGCCCTT
____________________________________________________________
consensus AAAGGCAGTCCCCTACATCTGATATGTGAAAAACCATTCTGTAAGATTCTTTTTGCCCTT
. : . : . : . : . : . :
rJMSF003K13+ TGATCTGTAAAGAGTTTCATTTGCTTCTCTTTTAGTAACAGAAATTATAGCACTGTAAAT
rJMSF032A01+ TGATCTGTAAAGAGTTTCATTTGCTTCTCTTTTAGTAACAGAAATTATAGCACTGTAAAT
rJMSF046O22+ TGATCTGTAAAGAGTTTCATTTGCTTCTCTTTTAGTAACAGAAATTATAGCACTGTAAAT
____________________________________________________________
consensus TGATCTGTAAAGAGTTTCATTTGCTTCTCTTTTAGTAACAGAAATTATAGCACTGTAAAT
. : . : . : . : . : . :
rJMSF003K13+ TAGACCTGATGGTACTTCACTGAAATACTCTGCTCTG
rJMSF032A01+ TAGACCTGATGGTACTTCACTGAAATACTCTGCTCTGTATAATCATAAAATAAATAC
rJMSF046O22+ TAGACCTGATGGTACTTCACTGAAATACTCTGCTCTGTATAATCATAAAATAAATACTGT
____________________________________________________________
consensus TAGACCTGATGGTACTTCACTGAAATACTCTGCTCTGTATAATCATAAAATAAATACTGT