Contig 014104:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003K24Sequence330005168 (3)emb|CDP13802.1|3e-22unnamed protein product [Coffea canephora]370014104 (3)
JMSF031L22Sequence636005168 (3)ref|XP_009775662.1|2e-85PREDICTED: ribonuclease 3-like protein 2 [Nicotiana sylvestris]518014104 (3)ref|XP_009608972.1|4e-21PREDICTED: ribonuclease 3-like protein 2 isoform X2 [Nicotiana tomentosiformis]
JMSF046B24Sequence679005168 (3)ref|XP_009775662.1|2e-97PREDICTED: ribonuclease 3-like protein 2 [Nicotiana sylvestris]786014104 (3)ref|XP_009775662.1|3e-32PREDICTED: ribonuclease 3-like protein 2 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF046B24+                                                              ACCAACCG
                      ____________________________________________________________
consensus                                                                 ACCAACCG
 
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rJMSF046B24+          CAGCCTGTAACGATGCTTTATGAACTTTGCCCAAAAAGTCGGGAAAAGTGGTGGATATAA
                      ____________________________________________________________
consensus             CAGCCTGTAACGATGCTTTATGAACTTTGCCCAAAAAGTCGGGAAAAGTGGTGGATATAA
 
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rJMSF046B24+          ACCATTGGAGGAATGGGGACAAAAACATTGCGAGTGTATATATCGATGGAGAATTCCTAG
                      ____________________________________________________________
consensus             ACCATTGGAGGAATGGGGACAAAAACATTGCGAGTGTATATATCGATGGAGAATTCCTAG
 
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rJMSF046B24+          TCTCATCTTCTTCAGAGCAAAAGGAAAATGCGAGGCTTCATGCAGCAAAGGCTGCACTGG
                      ____________________________________________________________
consensus             TCTCATCTTCTTCAGAGCAAAAGGAAAATGCGAGGCTTCATGCAGCAAAGGCTGCACTGG
 
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rJMSF031L22+                     TATAAAGCGAGTAACAAATACAGTATTGAGTTTGATGCGACAAAGGGAA
rJMSF046B24+          AGAAGATGGCTTATAAAGTGAGTAACAAATACAGTATTGAGTTTGATGCGACAAAGGGAA
                      ____________________________________________________________
consensus             AGAAGATGGCTTATAAAGTGAGTAACAAATACAGTATTGAGTTTGATGCGACAAAGGGAA
 
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rJMSF031L22+          ATGATGGAGCAAAGCAGAAGCTGTATGAACTTTGTGGAAAAAGGAAATGGCCCAAGCCAA
rJMSF046B24+          ATGATGGAGCAAAGCAGAAGCTGTATGAACTTTGTGGAAAAAGGAAATGGCCCAAGCCAA
                      ____________________________________________________________
consensus             ATGATGGAGCAAAGCAGAAGCTGTATGAACTTTGTGGAAAAAGGAAATGGCCCAAGCCAA
 
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rJMSF003K24+                                                            CCGAAAGTTN
rJMSF031L22+          CTTAT-------------AGAGTTGAGAAGGAGCTTGGCCCGTCCCATGACCGAAAGTTT
rJMSF046B24+          CTTATAGCTAATGTTTGCAGAGTTGAGAAGGAGCTTGGCCCGTCCCATGACCGAAAGTTT
                      ____________________________________________________________
consensus             CTTATAGCTAATGTTTGCAGAGTTGAGAAGGAGCTTGGCCCGTCCCATGACCGAAAGTTT
 
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rJMSF003K24+          GTCTGCTCAGTTCAAGTAGACAGCGGTNNTGATGGTGTGGTTTTCAGAGTAGGTAAGGAA
rJMSF031L22+          GTCTGCTCAGTTCAAGTAGACAGCGGTGATGATGGTGTGGTTTTCAGAGTAGGTAAGGAA
rJMSF046B24+          GTCTGCTCAGTTCAAGTAGACAGCGGTGATGATGGTGTGGTTTTCAGAGTAGGTAAGGAA
                      ____________________________________________________________
consensus             GTCTGCTCAGTTCAAGTAGACAGCGGTGATGATGGTGTGGTTTTCAGAGTAGGTAAGGAA
 
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rJMSF003K24+          AGGTCTCGGGTTATGTACGCGGCTGGAGACGAAATGCTTCGAATTAAAGANGCAGAGAAC
rJMSF031L22+          AGGTCTCGGGTTATGTACGCGGCTGGAGACGAAATGCTTCGAATTAAAGATGCAGAGAAC
rJMSF046B24+          AGGTCTCGGGTTATGTACGCGGCTGGAGACGAAATGCTTCGAATTAAAGATGCAGAGAAC
                      ____________________________________________________________
consensus             AGGTCTCGGGTTATGTACGCGGCTGGAGACGAAATGCTTCGAATTAAAGATGCAGAGAAC
 
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rJMSF003K24+          TCTGCAGCCTTNGCCATGTTGTGTGGTCTGAAAGACGCAAATGTCATANGATGTCTTCCC
rJMSF031L22+          TCTGCAGCCTTTGCCATGTTGTGTGGTCTGAAAGACGCAAATGTCATATGATGTCTTCCC
rJMSF046B24+          TCTGCAGCCTTTGCCATGTTGTGTGGTCTGAAAGACGCAAATGTCATATGATGTCTTCCC
                      ____________________________________________________________
consensus             TCTGCAGCCTTTGCCATGTTGTGTGGTCTGAAAGACGCAAATGTCATATGATGTCTTCCC
 
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rJMSF003K24+          TGCTTGTTGGGTTTATAGATGGCTTATAAATCTGGTACTTGCATAGATTCATAGAGAAAA
rJMSF031L22+          TGCTTGTTGGGTTTATAGATGGCTTATAAATCTGGTACTTGCATAGATTCATAGAGAAAA
rJMSF046B24+          TGCTTGTTGGGTTTATAGATGGCTTATAAATCTGGTACTTGCATAGATTCATAGAGAAAA
                      ____________________________________________________________
consensus             TGCTTGTTGGGTTTATAGATGGCTTATAAATCTGGTACTTGCATAGATTCATAGAGAAAA
 
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rJMSF003K24+          TGGACNCCNTCACCTTATATGATTGTAACNTGCTTCATCATTCTTACCCTCTTTACTTAA
rJMSF031L22+          TGGACACCATCACCTTATATGATTGTAACTTGCTTCATCATTCTTACCCTCTTTACTT-A
rJMSF046B24+          TGGACACCATCACCTTATATGATTGTAACTTGCTTCATCATTCTTACCCTCTTTACTT-A
                      ____________________________________________________________
consensus             TGGACACCATCACCTTATATGATTGTAACTTGCTTCATCATTCTTACCCTCTTTACTT-A
 
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rJMSF003K24+          AGCTCTGTTTGNGAAAAAGACAGCCGCTGTCTTTAAAGTATAGAGATATAGTGAGTTTTG
rJMSF031L22+          AGCTCTGTTTGTGAAAAAGACA-CCGCTGTCTTTAAAGTATAGAGATATAGTGAGTTTTG
rJMSF046B24+          AGCTCTGTTTGTGAAAAAGACA-CCGCTGTCTTTAAAGTATAGAGATATAGTGAGTTTTG
                      ____________________________________________________________
consensus             AGCTCTGTTTGTGAAAAAGACA-CCGCTGTCTTTAAAGTATAGAGATATAGTGAGTTTTG
 
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rJMSF046B24+          TGTCTTAATTATGGATTTTGGTCATAAAGTATTAAAGATGTATAATGAGAAAATGCAAAG
                      ____________________________________________________________
consensus             TGTCTTAATTATGGATTTTGGTCATAAAGTATTAAAGATGTATAATGAGAAAATGCAAAG