Contig 014100:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF051B16+                                                        CCANTACCAAGATA
                      ____________________________________________________________
consensus                                                           CCANTACCAAGATA
 
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rJMSF051B16+          GGTGGATTAATCCTTGGATTAGTACACAAAGCTTTAATGCTCCATTTGAGATTGGAGGAT
                      ____________________________________________________________
consensus             GGTGGATTAATCCTTGGATTAGTACACAAAGCTTTAATGCTCCATTTGAGATTGGAGGAT
 
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rJMSF051B16+          TAGTGTCTTTACAAAAGTTGTGTATTATACAAGCAAATGATACACTTGGCATCAAAACAG
                      ____________________________________________________________
consensus             TAGTGTCTTTACAAAAGTTGTGTATTATACAAGCAAATGATACACTTGGCATCAAAACAG
 
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rJMSF051B16+          TGTCTGAGATAGGAAAGCTAACACAACTAAGAAGACTAGCGGTTTCAAAGATGAGACAAG
                      ____________________________________________________________
consensus             TGTCTGAGATAGGAAAGCTAACACAACTAAGAAGACTAGCGGTTTCAAAGATGAGACAAG
 
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rJMSF051B16+          AAGATGGCAAAGAATTTTGTTTGTCTTTGGGAAAGTTGACAAACCTTTGCTCTTTATCTC
rJMSF045C19+                                                     CCTTTGCTCTTTATCTC
                      ____________________________________________________________
consensus             AAGATGGCAAAGAATTTTGTTTGTCTTTGGGAAAGTTGACAAACCTTTGCTCTTTATCTC
 
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rJMSF051B16+          TTACATCAACTTCAGAAGATGAGGTCCTTGATATCCAACATCCTCTACATGTTCCTCTTG
rJMSF045C19+          TTACATCAACTTCAGAAGATGAGGTCCTTGATATCCAACATCCTCTACATGTTCCTCTTG
                      ____________________________________________________________
consensus             TTACATCAACTTCAGAAGATGAGGTCCTTGATATCCAACATCCTCTACATGTTCCTCTTG
 
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rJMSF051B16+          GTCTTCAAAGATTATATTTGAAAGGGCCTCTGGAGATGGTACCTCAATGGTTGTCCTTAC
rJMSF045C19+          GTCTTCAAAGATTATATTTGAAAGGGCCTCTGGAGATGGTACCTCAATGGTTGTCCTTAC
                      ____________________________________________________________
consensus             GTCTTCAAAGATTATATTTGAAAGGGCCTCTGGAGATGGTACCTCAATGGTTGTCCTTAC
 
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rJMSF051B16+          TTGTAGGCTTAACCTGTTTAGAGTTTGGATGGTGTAGACTTCGTGAAGATTCACTATTGT
rJMSF045C19+          TTGTAGGCTTAACCTGTTTAGAGTTTGGATGGTGTAGACTTCGTGAAGATTCACTATTGT
                      ____________________________________________________________
consensus             TTGTAGGCTTAACCTGTTTAGAGTTTGGATGGTGTAGACTTCGTGAAGATTCACTATTGT
 
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rJMSF051B16+          TTATTGAAGATCTGCCCATGTTAGCACATCTAAAACTATTGGCAAAGTCTTATGAAGGGG
rJMSF045C19+          TTATTGAAGATCTGCCCATGTTAGCACATCTAAAACTATTGGCAAAGTCTTATGAAGGGG
                      ____________________________________________________________
consensus             TTATTGAAGATCTGCCCATGTTAGCACATCTAAAACTATTGGCAAAGTCTTATGAAGGGG
 
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rJMSF051B16+          AAGGGTTGTGCTTCAAGGCC-AAAAAGTTCTCAAAGCTCAAGTCTTTGATTATCTATAAG
rJMSF045C19+          AAGGGTTGTGCTTCAAGGCCAAAAAAGTTCTCAAAGCTCAAGTCTTTGATTATCTATAAG
                      ____________________________________________________________
consensus             AAGGGTTGTGCTTCAAGGCCAAAAAAGTTCTCAAAGCTCAAGTCTTTGATTATCTATAAG
 
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rJMSF051B16+          TTGGAGGCATTGAAATGGATAAGAATGGAGGAAGGTACATTAGATCATCTGGAAGAGTTT
rJMSF045C19+          TTGGAGGCATTGAAATGGATAAGAATGGAGGAAGGTACATTAGATCATCTGGAAGAGTTT
                      ____________________________________________________________
consensus             TTGGAGGCATTGAAATGGATAAGAATGGAGGAAGGTACATTAGATCATCTGGAAGAGTTT
 
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rJMSF051B16+          GATTTGGGAGAATGCAGTTTGGTTGAGGAGATGCCGATGGGTATTGAACATTTGTCCGAT
rJMSF045C19+          GATTTGGGAGAATGCAGTTTGGTTGAGGAGATGCCGATGGGTATTGAACATTTGTCCGAT
                      ____________________________________________________________
consensus             GATTTGGGAGAATGCAGTTTGGTTGAGGAGATGCCGATGGGTATTGAACATTTGTCCGAT
 
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rJMSF051B16+          CTTAAGGTAATTACTATCTATGACCTTGGCTGACAAATTCAATGCAAATT          
rJMSF045C19+          CTTAAGGTAATTACTATCTATGA-CTTGGCTGACAAATTCAATGCAAATTTAGTCTCAAA
                      ____________________________________________________________
consensus             CTTAAGGTAATTACTATCTATGACCTTGGCTGACAAATTCAATGCAAATTTAGTCTCAAA
 
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rJMSF045C19+          ATGCAAACGAAGTGAAGTATATGCAAAGATATCTCACATTCCAGAAATTAACATTTCCCA
                      ____________________________________________________________
consensus             ATGCAAACGAAGTGAAGTATATGCAAAGATATCTCACATTCCAGAAATTAACATTTCCCA
 
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rJMSF045C19+          TAAAATAGATGGCAAGCGGAAGTTTTTCTTTTAATTTAATGGCGGGTGGTCACGAGATTT
                      ____________________________________________________________
consensus             TAAAATAGATGGCAAGCGGAAGTTTTTCTTTTAATTTAATGGCGGGTGGTCACGAGATTT
 
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rJMSF045C19+          AGTATGTGCGTGCTGTATATATCTGAATACTTTGTGATTTTAATTTAGTTGTTTTTCAGA
                      ____________________________________________________________
consensus             AGTATGTGCGTGCTGTATATATCTGAATACTTTGTGATTTTAATTTAGTTGTTTTTCAGA
 
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rJMSF045C19+          GTATTAAATTAAAACTTTTGATTGTAATATATATTAATTGATGGTAGCTAGATTATCATA
                      ____________________________________________________________
consensus             GTATTAAATTAAAACTTTTGATTGTAATATATATTAATTGATGGTAGCTAGATTATCATA
 
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rJMSF045C19+          TGATTGTATTGTATTGTCTAATATGGCACTTTGATGACCTCTAATACTCTATGAAAGTGT
                      ____________________________________________________________
consensus             TGATTGTATTGTATTGTCTAATATGGCACTTTGATGACCTCTAATACTCTATGAAAGTGT