Contig 014099:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006B01Sequence306008056 (2)ref|XP_006346088.1|117PREDICTED: uncharacterized protein LOC102596748 [Solanum tuberosum]256014099 (4)
JMSF006B03Sequence283000791 (2)emb|CDP14134.1|2e-28unnamed protein product [Coffea canephora]359014099 (4)
JMSF045B12Sequence753023278ref|XP_010092392.1|5e-142THO complex subunit 3 [Morus notabilis] gb|EXB51068.1| THO complex subunit 3 [Mo578014099 (4)gb|EYU33742.1|5e-46hypothetical protein MIMGU_mgv1a0114402mg, partial [Erythranthe guttata]
JMSF046I09Sequence637008056 (2)ref|XP_009762108.1|206PREDICTED: uncharacterized protein LOC104214176 [Nicotiana sylvestris]723014099 (4)ref|XP_009348781.1|85.1PREDICTED: uncharacterized protein LOC103940393 [Pyrus x bretschneideri]

Alignment

This contig is upended


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rJMSF046I09+               TCTTCAGATTGGGAAGAGGATGAAGAGTTCCAGTGTGGAGATCAAGTGGAGGCCT
                      ____________________________________________________________
consensus                  TCTTCAGATTGGGAAGAGGATGAAGAGTTCCAGTGTGGAGATCAAGTGGAGGCCT
 
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rJMSF046I09+          CTCACTTGCTGCTCTCAATACGCAGTAACCGTTTGCCTTGTTTGCTTTGCAGGTCTTCTC
                      ____________________________________________________________
consensus             CTCACTTGCTGCTCTCAATACGCAGTAACCGTTTGCCTTGTTTGCTTTGCAGGTCTTCTC
 
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rJMSF046I09+          TTCCCAGCTTCAAGGTTCCTCGTCTGCGCTTGAAATCCCAAACCGGCAAACCCTAAGTCA
                      ____________________________________________________________
consensus             TTCCCAGCTTCAAGGTTCCTCGTCTGCGCTTGAAATCCCAAACCGGCAAACCCTAAGTCA
 
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rJMSF046I09+          ACAACTTTTTGGAGCATTGAAATGAAATCATCCATTCGTTTTAAGGACACGCAAAGAGGG
                      ____________________________________________________________
consensus             ACAACTTTTTGGAGCATTGAAATGAAATCATCCATTCGTTTTAAGGACACGCAAAGAGGG
 
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rJMSF046I09+          CAATGTCGCATTACATCTATGCGAGATACAAAAGCAAAACTACTTCAATCTCCAGCTTGA
                      ____________________________________________________________
consensus             CAATGTCGCATTACATCTATGCGAGATACAAAAGCAAAACTACTTCAATCTCCAGCTTGA
 
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rJMSF006B03+                                                            GGGTTGCCAA
rJMSF046I09+          AAGTCAGATGTTCAATTCGATGCCAAAAAACCTCAATCTTTCAGATCGGTGGGTTGCCAA
                      ____________________________________________________________
consensus             AAGTCAGATGTTCAATTCGATGCCAAAAAACCTCAATCTTTCAGATCGGTGGGTTGCCAA
 
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rJMSF006B03+          GTTCCTTNTTGNGGATGGTTATTGCAATTTTGCATCAATCTTGGAAAGAAGAATATTCTA
rJMSF046I09+          GTTCCTTCTTGTGGATGGTTATTGCAATTTTGCATCAATCTTGGAAAGAAGAATATTCTA
                      ____________________________________________________________
consensus             GTTCCTTCTTGTGGATGGTTATTGCAATTTTGCATCAATCTTGGAAAGAAGAATATTCTA
 
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rJMSF006B03+          GCTCTGCACCCACGACTCCAATTACCAACACTTCAGTTTTCAATTGGTGGGGCATTAAGA
rJMSF006B01+                       GACTCCAATTACCAACACNTCAGTTTTCANTTGGTGGGGCATTAAGA
rJMSF046I09+          GCTCTGCACCCACGACTCCAATTACCAACACTTCAGTTTTCAATTGGTGGGGCATTAAGA
                      ____________________________________________________________
consensus             GCTCTGCACCCACGACTCCAATTACCAACACTTCAGTTTTCAATTGGTGGGGCATTAAGA
 
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rJMSF006B03+          TCAAGCAAACTACTTCAAAGAGTTGGCAAGCTGCTATATTTTACAAGAGCCACCACCTAC
rJMSF006B01+          TCAAGCAAANTACTTCAAAGAGTNGGCAAGCTGCTATATTNGACAAGAGCCACCACNTAC
rJMSF046I09+          TCAAGCAAACTACTTCAAAGAGTTGGCAAGCTGCTATATTTTACAAGAGCCACCACCTAC
                      ____________________________________________________________
consensus             TCAAGCAAACTACTTCAAAGAGTTGGCAAGCTGCTATATTTTACAAGAGCCACCACCTAC
 
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rJMSF006B03+          TTCAACCTGCTACATTTACAAGTTGTCTATTTCCAAGGATTAAAACATTGTTCAAAGCTT
rJMSF006B01+          TTCAACCTGCTACATTTACAAGTNGTCTATTTCCAAGGATTAAAACATTGTTCAAAGCTT
rJMSF046I09+          TTCAACCTGCTACATTTACAAGTTGTCTATTTCCAAGGATTAAAACATTGTTCAAAGCTT
rJMSF045B12-                                             AGGATTAAAACATTGTTCAAAGCTT
                      ____________________________________________________________
consensus             TTCAACCTGCTACATTTACAAGTTGTCTATTTCCAAGGATTAAAACATTGTTCAAAGCTT
 
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rJMSF006B03+          TGCACCCACAACACAATCGGTGACAGGGTTTTGCATTTGTATCACTTGAGCAACAAATTA
rJMSF006B01+          TGCACCCACAACACAATCGGTGACAGGGTTTTGCATTTGTATCACTTGAGCAACAAATTA
rJMSF046I09+          TGCACCCACAACACAATCGGTGACAGGGTTTTGCATTTGTATCACTTGAGCAACAAATTA
rJMSF045B12-          TGCACCCACAACACAATCGGTGACAGGGTTTTGCATTTGTATCACTTGAGCAACAAATTA
                      ____________________________________________________________
consensus             TGCACCCACAACACAATCGGTGACAGGGTTTTGCATTTGTATCACTTGAGCAACAAATTA
 
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rJMSF006B03+          TCAGCA-CTGCTTAATAAGCCCAAAGTAACACTACTTGTGTTAATTCAAT          
rJMSF006B01+          TCAGCATCTGCTTAATAAGCCCAAAGTAA                               
rJMSF046I09+          TCAGCA-CTGCTTAATAAGCCCAAAGTAACACTACTTGTGTTAATTCAATTGTAATTGCC
rJMSF045B12-          TCAGCA-CTGCTTAATAAGCCCAAAGTAACACTACTTGTGTTAATTCAATTGTAATTGCC
                      ____________________________________________________________
consensus             TCAGCA-CTGCTTAATAAGCCCAAAGTAACACTACTTGTGTTAATTCAATTGTAATTGCC
 
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rJMSF046I09+          TCCTCAGAC                                                   
rJMSF045B12-          TCCTCAGACATCTTTTTACATTAATAAAAAGTATTCCTTTCACATTTTTGTGACGTGTCT
                      ____________________________________________________________
consensus             TCCTCAGACATCTTTTTACATTAATAAAAAGTATTCCTTTCACATTTTTGTGACGTGTCT
 
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rJMSF045B12-          CTCAATTAGCACAGTAGAAATAGCACTTGCAAACAGCAAATGGCCTTCTGTGCATGTTCA
                      ____________________________________________________________
consensus             CTCAATTAGCACAGTAGAAATAGCACTTGCAAACAGCAAATGGCCTTCTGTGCATGTTCA
 
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rJMSF045B12-          AGTACCCCACCACTAATTATGATGGGCAAAGGAACTTTGCTTGTTTTGTAGGTGTTGTTA
                      ____________________________________________________________
consensus             AGTACCCCACCACTAATTATGATGGGCAAAGGAACTTTGCTTGTTTTGTAGGTGTTGTTA
 
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rJMSF045B12-          TGCACTCTCAAAGCCAAATATACGAAACACACCTTCATCAGCTTGATACTTGTTTTTATC
                      ____________________________________________________________
consensus             TGCACTCTCAAAGCCAAATATACGAAACACACCTTCATCAGCTTGATACTTGTTTTTATC
 
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rJMSF045B12-          ATCTCCAGCATGAGCAAGCAAGTTTAACTTTGGGTTCCACTCCACACTGTTCATTGCAGC
                      ____________________________________________________________
consensus             ATCTCCAGCATGAGCAAGCAAGTTTAACTTTGGGTTCCACTCCACACTGTTCATTGCAGC
 
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rJMSF045B12-          ACGACAGGGAATCTGGTGAACTGACCGCCCAGTCTGAACATTTGCTATATCTATGAACAA
                      ____________________________________________________________
consensus             ACGACAGGGAATCTGGTGAACTGACCGCCCAGTCTGAACATTTGCTATATCTATGAACAA
 
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rJMSF045B12-          ATCCTCACTTGCAGAGGCAATGTATTCTCCTGTATGATTGAAACTTATTGTCCTAACTGG
                      ____________________________________________________________
consensus             ATCCTCACTTGCAGAGGCAATGTATTCTCCTGTATGATTGAAACTTATTGTCCTAACTGG