Contig 014098:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF044N24Sequence722014098 (2)ref|XP_006363906.1|2e-69PREDICTED: transcription factor VIP1-like [Solanum tuberosum]706014098 (2)emb|CBI18550.3|2e-81unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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JMSF044N24-           GGCGTGGCACGGCTTGGCAGTGTATTAGACCGCGTAACTATGGGTCCCACTTTACACCTT
                      ____________________________________________________________
consensus             GGCGTGGCACGGCTTGGCAGTGTATTAGACCGCGTAACTATGGGTCCCACTTTACACCTT
 
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JMSF044N24-           CCCTTATGTTCCCTTTCCCCATTTTTTCAACCCCCAAAATTTTCACTTCAAAGATTCTGC
                      ____________________________________________________________
consensus             CCCTTATGTTCCCTTTCCCCATTTTTTCAACCCCCAAAATTTTCACTTCAAAGATTCTGC
 
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JMSF044N24-           TTTCAGATGATGGACCCGAAGTTCGCCGGAAAGTTCACGCCGGCGCAGTACTTAGTTGGC
                      ____________________________________________________________
consensus             TTTCAGATGATGGACCCGAAGTTCGCCGGAAAGTTCACGCCGGCGCAGTACTTAGTTGGC
 
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JMSF044N24-           CGGACGGACCTCGACCAGATGCCCGACACCCCAACCCGCGGGTCCCGCCACCGCCGGACC
                      ____________________________________________________________
consensus             CGGACGGACCTCGACCAGATGCCCGACACCCCAACCCGCGGGTCCCGCCACCGCCGGACC
 
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JMSF044N24-           CAGTCCGAGACCTTCTTCCGGTTCCCGGACTTGGACGATGACATCATGCTCGACGACGTC
                      ____________________________________________________________
consensus             CAGTCCGAGACCTTCTTCCGGTTCCCGGACTTGGACGATGACATCATGCTCGACGACGTC
 
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JMSF044N24-           GTTGGAGACTTCAACCACGACGCCCTCGCCGACACCGCCATGCAGCCGGCAAACTCGGCC
                      ____________________________________________________________
consensus             GTTGGAGACTTCAACCACGACGCCCTCGCCGACACCGCCATGCAGCCGGCAAACTCGGCC
 
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JMSF044N24-           GACTCGTCCTCCACCGGGCCGCCGCGATCGGCCGGGCCGTTCTTTGACCATAAGCCGGCG
                      ____________________________________________________________
consensus             GACTCGTCCTCCACCGGGCCGCCGCGATCGGCCGGGCCGTTCTTTGACCATAAGCCGGCG
 
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JMSF044N24-           ACCCATTTCCGCAGCCTTTCCGTTGACTCCGACTTCTTCGATGGTCTGGAGCTGGGCCCT
                      ____________________________________________________________
consensus             ACCCATTTCCGCAGCCTTTCCGTTGACTCCGACTTCTTCGATGGTCTGGAGCTGGGCCCT
 
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JMSF044N24-           TCGTCCGCTGTCGGCGGCGGAGCAACCAACCCACTCTCGTCGGAGAAGATGGCGATGGGT
                      ____________________________________________________________
consensus             TCGTCCGCTGTCGGCGGCGGAGCAACCAACCCACTCTCGTCGGAGAAGATGGCGATGGGT
 
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JMSF044N24-           CCGGGCCCACGCCACAGGCACAGTAGCTCGATGGATGGGTCTTTCGCTACGGCGTCGTTC
                      ____________________________________________________________
consensus             CCGGGCCCACGCCACAGGCACAGTAGCTCGATGGATGGGTCTTTCGCTACGGCGTCGTTC
 
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JMSF044N24-           GAGGTCGATTCCATCTCGGAGAAGAAAGCTATGGAAGCTGACAGACTTGCAGAGCTTGCC
rJMSF044N24+                        CTCGGAGAAGAAAGCTATGGAAGCTGACAGACTTGCAGAGCTTGCC
                      ____________________________________________________________
consensus             GAGGTCGATTCCATCTCGGAGAAGAAAGCTATGGAAGCTGACAGACTTGCAGAGCTTGCC
 
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JMSF044N24-           TTGATTGACCCTAAGAGAGCTAAAAGGATTCTAGCAAACCGGCAATCTGCAGCGCGTTCA
rJMSF044N24+          TTGATTGACCCTAAGAGAGCTAAAAGGATTCTAGCAAACCGGCAATCTGCAGCGCGTTCA
                      ____________________________________________________________
consensus             TTGATTGACCCTAAGAGAGCTAAAAGGATTCTAGCAAACCGGCAATCTGCAGCGCGTTCA
 
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JMSF044N24-           AA                                                          
rJMSF044N24+          AAGGAGCGAAAGATTCGCTACACAAGTGAGCTGGAGAGGAAAGTGCAGACACTGCAGACT
                      ____________________________________________________________
consensus             AAGGAGCGAAAGATTCGCTACACAAGTGAGCTGGAGAGGAAAGTGCAGACACTGCAGACT
 
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rJMSF044N24+          GAAGCAACTACTCTCTCTGCACAGATTACTCACCTGCAGAGAGATACTTCTGGACTGACT
                      ____________________________________________________________
consensus             GAAGCAACTACTCTCTCTGCACAGATTACTCACCTGCAGAGAGATACTTCTGGACTGACT
 
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rJMSF044N24+          GCTGAGAACAAAGAACTCAAACTGCGGTTACAGGCTTTGGAACAAGAAGCTCATCTTCGG
                      ____________________________________________________________
consensus             GCTGAGAACAAAGAACTCAAACTGCGGTTACAGGCTTTGGAACAAGAAGCTCATCTTCGG
 
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rJMSF044N24+          GATGCTCTAAACGAAGCTCTGAAGGAAGAATTGCAGCGGCTTAAGATAGCAGCTGGGCAG
                      ____________________________________________________________
consensus             GATGCTCTAAACGAAGCTCTGAAGGAAGAATTGCAGCGGCTTAAGATAGCAGCTGGGCAG
 
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rJMSF044N24+          GCTCAATCTGCCAATGGGAACAGCATGAACAGGGGACTGGGCCCTCAACTTCATCCGCAA
                      ____________________________________________________________
consensus             GCTCAATCTGCCAATGGGAACAGCATGAACAGGGGACTGGGCCCTCAACTTCATCCGCAA
 
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rJMSF044N24+          TCACAGGCCTTTGTTCACTTTGGCAACCACGAAGCGCAGCAGCTTCACATGCCTCGTCCC
                      ____________________________________________________________
consensus             TCACAGGCCTTTGTTCACTTTGGCAACCACGAAGCGCAGCAGCTTCACATGCCTCGTCCC
 
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rJMSF044N24+          ACCACGAGCATGCCAAATGTCGGTGGGCATCCCCAGCCTGGCTTCCTGGATTTCAATCAG
                      ____________________________________________________________
consensus             ACCACGAGCATGCCAAATGTCGGTGGGCATCCCCAGCCTGGCTTCCTGGATTTCAATCAG
 
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rJMSF044N24+          AGGGCTTGATTACAATCTGAAGACTATAGCTACACAATTAATGTATCATATATAGCTTCA
                      ____________________________________________________________
consensus             AGGGCTTGATTACAATCTGAAGACTATAGCTACACAATTAATGTATCATATATAGCTTCA
 
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rJMSF044N24+          TATATAAGTCATATAGATTATGGTTGCATAGAGTTGCTCTAATCAATTAGTTGTGTCTAT
                      ____________________________________________________________
consensus             TATATAAGTCATATAGATTATGGTTGCATAGAGTTGCTCTAATCAATTAGTTGTGTCTAT
 
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rJMSF044N24+          TACTAATAGCAGCTTGTACCAATCTGAAGGGTAGAGGTTCTGTTAAGAATATCTTTCAAT
                      ____________________________________________________________
consensus             TACTAATAGCAGCTTGTACCAATCTGAAGGGTAGAGGTTCTGTTAAGAATATCTTTCAAT