Contig 014097:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF044N04Sequence698014097 (2)ref|XP_009761175.1|7e-54PREDICTED: SNAP25 homologous protein SNAP33 [Nicotiana sylvestris]772014097 (2)ref|XP_009761175.1|4e-95PREDICTED: SNAP25 homologous protein SNAP33 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF044N04-                                    GATTTTGATCCTTTCAACTCTTTCCATTTCCATTT
                      ____________________________________________________________
consensus                                      GATTTTGATCCTTTCAACTCTTTCCATTTCCATTT
 
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JMSF044N04-           TCCAATATTGAAACTACACTACACGCTTATCATTCACTTATAATTCTGTATATATGCACA
                      ____________________________________________________________
consensus             TCCAATATTGAAACTACACTACACGCTTATCATTCACTTATAATTCTGTATATATGCACA
 
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JMSF044N04-           CAAGTACAAATATACCACCTTCAATTTCAGCATTCAAGCTCTTTCTAGATTTCTTCTTTT
                      ____________________________________________________________
consensus             CAAGTACAAATATACCACCTTCAATTTCAGCATTCAAGCTCTTTCTAGATTTCTTCTTTT
 
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JMSF044N04-           TTCTGTCTCCAGTGTAGATCGGCTTTCTTGGAAAGCGTGCGTTAAATCTTGACACCGCGC
                      ____________________________________________________________
consensus             TTCTGTCTCCAGTGTAGATCGGCTTTCTTGGAAAGCGTGCGTTAAATCTTGACACCGCGC
 
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JMSF044N04-           CTTTGGATTCTCGGGATATATTCTTTTCTGTGGCTGTAGCAGTTGATCCTTCTGACATCC
                      ____________________________________________________________
consensus             CTTTGGATTCTCGGGATATATTCTTTTCTGTGGCTGTAGCAGTTGATCCTTCTGACATCC
 
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JMSF044N04-           TGATTTCATCCTGCAAAGTTTTGTGACTCAAAATGTTTGGTCTTAAGAAGTTGTCCCCCT
                      ____________________________________________________________
consensus             TGATTTCATCCTGCAAAGTTTTGTGACTCAAAATGTTTGGTCTTAAGAAGTTGTCCCCCT
 
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JMSF044N04-           TGAACAAGAATACTAGAAACCACTCAGTTGATCCTGGATTTCATACCTATTCTAATTCAA
                      ____________________________________________________________
consensus             TGAACAAGAATACTAGAAACCACTCAGTTGATCCTGGATTTCATACCTATTCTAATTCAA
 
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JMSF044N04-           ACCCTTTTGATTCTGATGATGAGTATGATAAGAAGCAAACTGTCAAAGCCTCAAGGAGTT
                      ____________________________________________________________
consensus             ACCCTTTTGATTCTGATGATGAGTATGATAAGAAGCAAACTGTCAAAGCCTCAAGGAGTT
 
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JMSF044N04-           CTTCAGAGCCTGCTCTAGTTGCTCCAAATTTGAGCACTAACCCCTTTGATGATGATGAGA
                      ____________________________________________________________
consensus             CTTCAGAGCCTGCTCTAGTTGCTCCAAATTTGAGCACTAACCCCTTTGATGATGATGAGA
 
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JMSF044N04-           CTAAAGTGGGGAAATCCTCATCAGCATACTCCTTCACTTCAGCAGACAGAAACAGATACA
                      ____________________________________________________________
consensus             CTAAAGTGGGGAAATCCTCATCAGCATACTCCTTCACTTCAGCAGACAGAAACAGATACA
 
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JMSF044N04-           AGAATGGTTTCCATGATTCAGGAGGATTGGAGAATCAATCTGTACAAGAATTGGAAAATT
                      ____________________________________________________________
consensus             AGAATGGTTTCCATGATTCAGGAGGATTGGAGAATCAATCTGTACAAGAATTGGAAAATT
 
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JMSF044N04-           ATGCTGTGTATAAAGCTGAAGAGACTACAAAATCAGTAAATGGCTGTTTGAAGATTGCTG
rJMSF044N04+                  TATAAAGCTGAAGAGACTACAAAATCAGTAAATGGCTGTTTGAAGATTGCTG
                      ____________________________________________________________
consensus             ATGCTGTGTATAAAGCTGAAGAGACTACAAAATCAGTAAATGGCTGTTTGAAGATTGCTG
 
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JMSF044N04-           AAG                                                         
rJMSF044N04+          AAGAGATAAGAGAGGATGCCACTAAAACATTAATCACCCTACATCACCAGAGTGAGCAAA
                      ____________________________________________________________
consensus             AAGAGATAAGAGAGGATGCCACTAAAACATTAATCACCCTACATCACCAGAGTGAGCAAA
 
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rJMSF044N04+          TTACTAGAACTCACATGACTGCTGCTGACATTGACTATGATCTTAGCAGGGGTGAAAAAC
                      ____________________________________________________________
consensus             TTACTAGAACTCACATGACTGCTGCTGACATTGACTATGATCTTAGCAGGGGTGAAAAAC
 
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rJMSF044N04+          TTTTGGGCAGTCTTGGGGGCTTATTTTCCAAGACTTGGAAGCCTAAGAAGAATCGTCCAA
                      ____________________________________________________________
consensus             TTTTGGGCAGTCTTGGGGGCTTATTTTCCAAGACTTGGAAGCCTAAGAAGAATCGTCCAA
 
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rJMSF044N04+          TAACAGGGCCTATCATCACTAAAGATGATCCAGTACCAAGGAGAGGTAACCACTTGGAGC
                      ____________________________________________________________
consensus             TAACAGGGCCTATCATCACTAAAGATGATCCAGTACCAAGGAGAGGTAACCACTTGGAGC
 
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rJMSF044N04+          AGAGGGAGAAACTTGGATTGAATTCTGCAACCAAAGGGCAGTCAAATGCACGAAGACCAC
                      ____________________________________________________________
consensus             AGAGGGAGAAACTTGGATTGAATTCTGCAACCAAAGGGCAGTCAAATGCACGAAGACCAC
 
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rJMSF044N04+          TCCCTGAACCAACTAATGCATTGCAGAAAGTTGAGGTGGAAAAGGCAAAGCAAGATGATG
                      ____________________________________________________________
consensus             TCCCTGAACCAACTAATGCATTGCAGAAAGTTGAGGTGGAAAAGGCAAAGCAAGATGATG
 
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rJMSF044N04+          CCCTGTCTGATCTTAGTAATCTCTTGGGGGAGCTCAAGGAAATGGCAATGGACATGGGGT
                      ____________________________________________________________
consensus             CCCTGTCTGATCTTAGTAATCTCTTGGGGGAGCTCAAGGAAATGGCAATGGACATGGGGT
 
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rJMSF044N04+          CTGAAATTGATAGGAGTAATTCGGCCTTGGATCATCTCGACAATGATATTGATGAGCTCA
                      ____________________________________________________________
consensus             CTGAAATTGATAGGAGTAATTCGGCCTTGGATCATCTCGACAATGATATTGATGAGCTCA
 
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rJMSF044N04+          ACTACAGAGTGAGAGGTGCTAATATGCGAGGCCGCCATTTGCTTGGGAGGAAGTAGCATC
                      ____________________________________________________________
consensus             ACTACAGAGTGAGAGGTGCTAATATGCGAGGCCGCCATTTGCTTGGGAGGAAGTAGCATC
 
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rJMSF044N04+          TGTTCAGGATCAACTTGATGACTTTTTGTTGTTCCTAAACCATGTTTGGCTCCCTTTCTA
                      ____________________________________________________________
consensus             TGTTCAGGATCAACTTGATGACTTTTTGTTGTTCCTAAACCATGTTTGGCTCCCTTTCTA
 
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rJMSF044N04+          TAGTAGAGCAGAGCTTAGAGAATAACCGTTCATTCGTTGTTGGTACCATACTCCTTGATG
                      ____________________________________________________________
consensus             TAGTAGAGCAGAGCTTAGAGAATAACCGTTCATTCGTTGTTGGTACCATACTCCTTGATG
 
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rJMSF044N04+          CGCATTATTGTTATTCATAGGAATTTTACTGATGTTTTTATTCATTGAACTATGAAGTGT
                      ____________________________________________________________
consensus             CGCATTATTGTTATTCATAGGAATTTTACTGATGTTTTTATTCATTGAACTATGAAGTGT