Contig 014095:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021H21Sequence665005070 (2)ref|XP_009598906.1|2e-55PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X1 [Nicotiana t803014095 (2)ref|XP_009598909.1|3e-88PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X3 [Nicotiana t
JMSF044I22Sequence764005070 (2)ref|XP_009598906.1|1e-56PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X1 [Nicotiana t706014095 (2)ref|XP_009598906.1|5e-75PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X1 [Nicotiana t

Alignment

This contig is upended


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rJMSF021H21+                                        AAAGGGTGGTCCAAGGATGGAGANCCAGAT
                      ____________________________________________________________
consensus                                           AAAGGGTGGTCCAAGGATGGAGANCCAGAT
 
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rJMSF021H21+          GCTCCCCNACCACAAGATATGACTTCACCGAGGGGCATCCAATCTGATGCATCGGGCTCT
                      ____________________________________________________________
consensus             GCTCCCCNACCACAAGATATGACTTCACCGAGGGGCATCCAATCTGATGCATCGGGCTCT
 
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rJMSF021H21+          AATAAGATGCATCTGGATACTGTGTCTGATGAAGATGGTTTAGAGAGTGATGGAGATGGG
rJMSF044I22+                        GGATACTGTGTCTGATGAAGATGGTTTAGAGAGTGATGGAGATGGG
                      ____________________________________________________________
consensus             AATAAGATGCATCTGGATACTGTGTCTGATGAAGATGGTTTAGAGAGTGATGGAGATGGG
 
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rJMSF021H21+          TGTTGGCCCTTTCAAAGTTTTGTTGAACAACTCATGGTTGATATGTTTGATCCTTTATGG
rJMSF044I22+          TGTTGGCCCTTTCAAAGTTTTGTTGAACAACTCATGGTTGATATGTTTGATCCTTTATGG
                      ____________________________________________________________
consensus             TGTTGGCCCTTTCAAAGTTTTGTTGAACAACTCATGGTTGATATGTTTGATCCTTTATGG
 
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rJMSF021H21+          GAGATTCGTCATGGCAGTGTCATGGCATTAAGAGAGATATTAACCCATCAAGGTGCAAAT
rJMSF044I22+          GAGATTCGTCATGGCAGTGTCATGGCATTAAGAGAGATATTAACCCATCAAGGTGCAAAT
                      ____________________________________________________________
consensus             GAGATTCGTCATGGCAGTGTCATGGCATTAAGAGAGATATTAACCCATCAAGGTGCAAAT
 
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rJMSF021H21+          GCTGGAGCTATTATGCCTGATCGCAGCCTTGATGTTGGATTAGGTTCTATTTTAAAAGAC
rJMSF044I22+          GCTGGAGCTATTATGCCTGATCGCAGCCTTGATGTTGGATTAGGTTCTATTTTAAAAGAC
                      ____________________________________________________________
consensus             GCTGGAGCTATTATGCCTGATCGCAGCCTTGATGTTGGATTAGGTTCTATTTTAAAAGAC
 
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rJMSF021H21+          AGGGTTGTTGAAAAGCAGGAAAGTGTAATTGATTTGAATATACAAGTTCCAGTTGATGAG
rJMSF044I22+          AGGGTTGTTGAAAAGCAGGAAAGTGTAATTGATTTGAATATACAAGTTCCAGTTGATGAG
                      ____________________________________________________________
consensus             AGGGTTGTTGAAAAGCAGGAAAGTGTAATTGATTTGAATATACAAGTTCCAGTTGATGAG
 
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rJMSF021H21+          TCTGAGCCAGCTTTTAAGAAGCCTAAGATTGAAGATGCATCACCTCTTCTGATGGATACA
rJMSF044I22+          TCTGAGCCAGCTTTTAAGAAGCCTAAGATTGAAGATGCATCACCTCTTCTGATGGATACA
                      ____________________________________________________________
consensus             TCTGAGCCAGCTTTTAAGAAGCCTAAGATTGAAGATGCATCACCTCTTCTGATGGATACA
 
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rJMSF021H21+          ATTCCTTCTGCCAGCATGGTTGGTAACATTGACAATATTCAAGTGAAAGTCGAAGATGTT
rJMSF044I22+          ATTCCTTCTGCCAGCATGGTTGGTAACATTGACAATATTCAAGTGAAAGTCGAAGATGTT
                      ____________________________________________________________
consensus             ATTCCTTCTGCCAGCATGGTTGGTAACATTGACAATATTCAAGTGAAAGTCGAAGATGTT
 
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rJMSF021H21+          GGATTGAATTTGCCAGTAAAGCAGGAAAATGGTGAATTTAATGTTGGCTCTCTGAAGATG
rJMSF044I22+          GGATTGAATTTGCCAGTAAAGCAGGAAAATGGTGAATTTAATGTTGGCTCTCTGAAGATG
                      ____________________________________________________________
consensus             GGATTGAATTTGCCAGTAAAGCAGGAAAATGGTGAATTTAATGTTGGCTCTCTGAAGATG
 
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rJMSF021H21+          GAGATTCAGTCTAATTCCAATAGTGAAAGTTCTTTCAATAATGATATGGTAGAGGCAAAG
rJMSF044I22+          GAGATTCAGTCTAATTCCAATAGTGAAAGTTCTTTCAATAATGATATGGTAGAGGCAAAG
                      ____________________________________________________________
consensus             GAGATTCAGTCTAATTCCAATAGTGAAAGTTCTTTCAATAATGATATGGTAGAGGCAAAG
 
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rJMSF021H21+          AGCTCCTGTGAGGACAATATCTCCTTAGAAAAGATGGATCTACCAAGAAATCTTCCAGAA
rJMSF044I22+          AGCTCCTGTGAGGACAATATCTCCTTAGAAAAGATGGATCTACCAAGAAATCTTCCAGAA
                      ____________________________________________________________
consensus             AGCTCCTGTGAGGACAATATCTCCTTAGAAAAGATGGATCTACCAAGAAATCTTCCAGAA
 
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rJMSF021H21+          AATTGTGAGCTGATGAACTTGGTTAAATTGGCTAGGCATTCTTGGCTTAAAAATTCTGAA
rJMSF044I22+          AATTGTGAGCTGATGAACTTGGTTAAATTGGCTAGGCATTCTTGGCTTAAAAATTCTGAA
                      ____________________________________________________________
consensus             AATTGTGAGCTGATGAACTTGGTTAAATTGGCTAGGCATTCTTGGCTTAAAAATTCTGAA
 
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rJMSF021H21+          TTTCTTCAAGACTGTGCAATTCGTTTCTTGTGTATATTGTC                   
rJMSF044I22+          TTTCTTCAAGACTGTGCAATTCGTTTCTTGTGTATATTGTCCACTGGACCGGTATGAAAT
                      ____________________________________________________________
consensus             TTTCTTCAAGACTGTGCAATTCGTTTCTTGTGTATATTGTCCACTGGACCGGTATGAAAT