| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF044D09 | Sequence | 796 | 010938 (3) | ref|XP_009774336.1| | 6e-80 | PREDICTED: protein TIC 62, chloroplastic [Nicotiana sylvestris] | 756 | 014094 (3) | emb|CDP09104.1| | 2e-29 | unnamed protein product [Coffea canephora] |
| JMSF051G04 | Sequence | 692 | 010938 (3) | ref|XP_009774336.1| | 1e-77 | PREDICTED: protein TIC 62, chloroplastic [Nicotiana sylvestris] | 762 | 014094 (3) | emb|CDP09104.1| | 1e-28 | unnamed protein product [Coffea canephora] |
| JMSF051G14 | Sequence | 692 | 010938 (3) | ref|XP_009774336.1| | 2e-82 | PREDICTED: protein TIC 62, chloroplastic [Nicotiana sylvestris] | 712 | 014094 (3) | emb|CDP09104.1| | 2e-27 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF051G04+ GTGTCATACCGGAGGATGGCCGAAGAAAAGCTTA
____________________________________________________________
consensus GTGTCATACCGGAGGATGGCCGAAGAAAAGCTTA
. : . : . : . : . : . :
rJMSF051G04+ TGCAGAATCTGTTGCAAAAGCTAAGGCAGAGCAAGAAGCCGTAGAAGCAAGTGAGAAAGC
rJMSF044D09+ GGCAGAGCAAGAAGCCGTAGAAGCAAGTGAGAAAGC
____________________________________________________________
consensus TGCAGAATCTGTTGCAAAAGCTAAGGCAGAGCAAGAAGCCGTAGAAGCAAGTGAGAAAGC
. : . : . : . : . : . :
rJMSF051G04+ TCAG-CAAGCAGCTAAAGAAGAGGAAGTGAAGAAGCGTGAGCAGCAAGGAACCAAGGCCG
rJMSF051G14+ CAAGCAGNTNAAGAAGAGGAAGTGAAGAAGCGTGAGCAGCAAGGAACCAAGGCCN
rJMSF044D09+ TCAGCCAAGCAGCTAAAGAAGAGGAAGTGAAGAAGCGTGAGCAGCAAGGAACCAAGGCCG
____________________________________________________________
consensus TCAGCCAAGCAGCTAAAGAAGAGGAAGTGAAGAAGCGTGAGCAGCAAGGAACCAAGGCCG
. : . : . : . : . : . :
rJMSF051G04+ TTAATCTTGGCAAAGAAGCTGAAGAGAAGGCTGCGGCTGCTGGAATATCAGTGGATGGCC
rJMSF051G14+ TTAATCTTGGCAAAGAAGCTGAAGAGAAGGCTNCGGCTGCTGGAATATCAGTGGATGGCC
rJMSF044D09+ TTAATCTTGGCAAAGAAGCTGAAGAGAAGGCTGCGGCTGCTGGAATATCAGTGGATGGCC
____________________________________________________________
consensus TTAATCTTGGCAAAGAAGCTGAAGAGAAGGCTGCGGCTGCTGGAATATCAGTGGATGGCC
. : . : . : . : . : . :
rJMSF051G04+ TTTTGGATAAAGCAAAAGGGTTCAGTTCTGGACTGTCTTGGGAAAAGTTGAGCTCACAGC
rJMSF051G14+ TTTTGGATAAAGCAAAAGGGTTCAGTTCTGGACTGTCTTGGGAANAGTTGAGCTCACAGC
rJMSF044D09+ TTTTGGATAAAGCAAAAGGGTTCAGTTCTGGACTGTCTTGGGAAAAGTTGAGCTCACAGC
____________________________________________________________
consensus TTTTGGATAAAGCAAAAGGGTTCAGTTCTGGACTGTCTTGGGAAAAGTTGAGCTCACAGC
. : . : . : . : . : . :
rJMSF051G04+ TTAACTCCGCTGTTCAAGAGCGCACTGAGGAGGTGGAGGAACCAAAAGCCAAAGGATTGA
rJMSF051G14+ TTAACTCCGCTGTTCAAGAGCGCACTGAGGAGGTGGAGGAACCAAAAGCCAAAGGATTGA
rJMSF044D09+ TTAACTCCGCTGTTCAAGAGCGCACTGAGGAGGTGGAGGAACCAAAAGCCAAAGGATTGA
____________________________________________________________
consensus TTAACTCCGCTGTTCAAGAGCGCACTGAGGAGGTGGAGGAACCAAAAGCCAAAGGATTGA
. : . : . : . : . : . :
rJMSF051G04+ GCTCCGGACTGTCTTGGGAAACTTTCAGCTCGCAGCTTAAATCCGTTGTTCAAAAGGCTA
rJMSF051G14+ GCTCCGGACTGTCTTGGGAAACTTTCAGCTCGCAGCTTAAATCCGTTGTTCAAAAGGCTA
rJMSF044D09+ GCTCCGGACTGTCTTGGGAAACTTTCAGCTCGCAGCTTAAATCCGTTGTTCAAAAGGCTA
____________________________________________________________
consensus GCTCCGGACTGTCTTGGGAAACTTTCAGCTCGCAGCTTAAATCCGTTGTTCAAAAGGCTA
. : . : . : . : . : . :
rJMSF051G04+ GTGAGGAAGAGGAGGAGGAACCCAAAGTGCGGCTTGCTACTGTTAGGGGACAGGCCAAGG
rJMSF051G14+ GTGAGGAAGNGGAGGAGGAACCCAAAGTGCGGCTTGNTNCTGTTAGGGGACNGGCCAAGG
rJMSF044D09+ GTGAGGAAGAGGAGGAGGAACCCAAAGTGCGGCTTGCTACTGTTAGGGGACAGGCCAAGG
____________________________________________________________
consensus GTGAGGAAGAGGAGGAGGAACCCAAAGTGCGGCTTGCTACTGTTAGGGGACAGGCCAAGG
. : . : . : . : . : . :
rJMSF051G04+ CGCGGAATTTGCCTCCACAGAAAGCAGTAGTCAAGTCTGCAGCACTGAAACCAAAACCGA
rJMSF051G14+ CGCGGAATTTGCCTCCACAGNAAGCAGTAGTCAAGTCTGCAGCACTGAAACCAAAACCGA
rJMSF044D09+ CGCGGAATTTGCCTCCACAGAAAGCAGTAGTCAAGTCTGCAGCACTGAAACCAAAACCGA
____________________________________________________________
consensus CGCGGAATTTGCCTCCACAGAAAGCAGTAGTCAAGTCTGCAGCACTGAAACCAAAACCGA
. : . : . : . : . : . :
rJMSF051G04+ AGCCAAAACCAGCAGAGGCCCCTAAGCCCAAAGCCAAACAAACTGATTCAAAGGCAGAAG
rJMSF051G14+ AGCCAAANCCAGCAGNGGCCCCTAAGCCCAAAGCCAAACAAACTGATTCAAAGGCAGAAG
rJMSF044D09+ AGCCAAAACCAGCAGAGGCCCCTAAGCCCAAAGCCAAACAAACTGATTCAAAGGCAGAAG
____________________________________________________________
consensus AGCCAAAACCAGCAGAGGCCCCTAAGCCCAAAGCCAAACAAACTGATTCAAAGGCAGAAG
. : . : . : . : . : . :
rJMSF051G04+ TGAGAAAGGTTTTTGGTGGGCTGTTCCAACAAGAGACCATCTACATTGATGATGACTGAA
rJMSF051G14+ TGAGAAAGGTTTTTGGTGGGCTGTTCCAACAAGAGACCATCTACATTGNTGATGACTGAA
rJMSF044D09+ TGAGAAAGGTTTTTGGTGGGCTGTTCCAACAAGAGACCATCTACATTGATGATGACTGAA
____________________________________________________________
consensus TGAGAAAGGTTTTTGGTGGGCTGTTCCAACAAGAGACCATCTACATTGATGATGACTGAA
. : . : . : . : . : . :
rJMSF051G04+ AGGAGATATAGTAAGAGTATGTATCTAATTTTTCTGATTTTATTTAAATTCAACGCGTTT
rJMSF051G14+ AGGAGATATAGTAAGAGTATGTATCTAATTTTTCTGATTTTATTTAAATTCAACGCGTTT
rJMSF044D09+ AGGAGATATAGTAAGAGTATGTATCTAATTTTTCTGATTTTATTTAAATTCAACGCGTTT
____________________________________________________________
consensus AGGAGATATAGTAAGAGTATGTATCTAATTTTTCTGATTTTATTTAAATTCAACGCGTTT
. : . : . : . : . : . :
rJMSF051G04+ TACTTTTAGAGTACTTTGATGCCAAGGGTGGTTGCATTGGTTTAGAGAGACTGAGCAAGA
rJMSF051G14+ TNCTTTTAGAGTACTTTGATGCCAAGGGTGGTTGCATTGGTTTAGAGAGACTGAGCAAGA
rJMSF044D09+ TACTTTTAGAGTACTTTGATGCCAAGGGTGGTTGCATTGGTTTAGAGAGACTGAGCAAGA
____________________________________________________________
consensus TACTTTTAGAGTACTTTGATGCCAAGGGTGGTTGCATTGGTTTAGAGAGACTGAGCAAGA
. : . : . : . : . : . :
rJMSF051G04+ AATATGTAC
rJMSF051G14+ AATATGTACAGTCCTNCACACAATAATTATCCTTGTCAATTGAGAGGTTT
rJMSF044D09+ AATATGTACAGTCCTGCACACAATAATTATCCTTGTCAATTGAGAGGTTTGGCTTGTAAT
____________________________________________________________
consensus AATATGTACAGTCCTGCACACAATAATTATCCTTGTCAATTGAGAGGTTTGGCTTGTAAT