Contig 014090:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN033M10Sequence205014090 (2)ref|XP_004230006.1|4e-31PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial
JMSF043N18Sequence779024266ref|XP_009600385.1|6e-26PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial661014090 (2)ref|XP_009801005.1|2e-92PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial

Alignment

This contig is upended


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rJMSF043N18-                                                                     T
                      ____________________________________________________________
consensus                                                                        T
 
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rJMSF043N18-          TTGCTTCTAAGATTGTCACAACAAATACTTTTCATCCTTTCATATACGGCTGACTTTCTC
                      ____________________________________________________________
consensus             TTGCTTCTAAGATTGTCACAACAAATACTTTTCATCCTTTCATATACGGCTGACTTTCTC
 
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JMFN033M10+                        AGATTTTTGGTCTCCATCTCCTGGAGAACTCTAATTCCTTCTTGTGC
rJMSF043N18-          CTTAGAAATCTTAAGATTTTTGGTCTCCATCTCCTGGAGAACTCTAATTCCTTCTTGTGC
                      ____________________________________________________________
consensus             CTTAGAAATCTTAAGATTTTTGGTCTCCATCTCCTGGAGAACTCTAATTCCTTCTTGTGC
 
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JMFN033M10+           ATTACCAATTTTACAAAATCCCTTATAAAGCATGTTATAAGTAAAAGCATTAGGAGTGCA
rJMSF043N18-          ATTACCAATTTTACAAAATCCCTTATAAAGCATGTTATAAGTAAAAGCATTAGGAGTGCA
                      ____________________________________________________________
consensus             ATTACCAATTTTACAAAATCCCTTATAAAGCATGTTATAAGTAAAAGCATTAGGAGTGCA
 
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JMFN033M10+           CCCCTTCTCCACCATGTCATCCCATAGCCTCCCCGCGTCTAATATCTCGCCTTTCTCGCA
rJMSF043N18-          CCCCTTCTCCACCATGTCATCCCATAGCCTCCCCGCGTCTAATATCTCGCCTTTCTCGCA
                      ____________________________________________________________
consensus             CCCCTTCTCCACCATGTCATCCCATAGCCTCCCCGCGTCTAATATCTCGCCTTTCTCGCA
 
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JMFN033M10+           CATTCCTGCAATTAGCATGTTATACATCAACACGCTGG                      
rJMSF043N18-          CATTCCTGCAATTAGCATGTTATACATCAACACGCTGGGCACCGAGCCTCTCTCGAGCTC
                      ____________________________________________________________
consensus             CATTCCTGCAATTAGCATGTTATACATCAACACGCTGGGCACCGAGCCTCTCTCGAGCTC
 
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rJMSF043N18-          GTCGAACAATTTCTTTGCTTCCCAGATTTTGCCCTCCTTACATAGCCAATGTATAAGCGT
                      ____________________________________________________________
consensus             GTCGAACAATTTCTTTGCTTCCCAGATTTTGCCCTCCTTACATAGCCAATGTATAAGCGT
 
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rJMSF043N18-          GCTTGATATTGTAGTATCCGGGGTGCAATTCTTTATCAACAATTTCTTCCATAGATCACA
                      ____________________________________________________________
consensus             GCTTGATATTGTAGTATCCGGGGTGCAATTCTTTATCAACAATTTCTTCCATAGATCACA
 
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rJMSF043N18-          TGCCTCTTGGACCTTCCCTGCTTCACACATGGCATCAATCACCCTACAACAAAGGGTTTC
                      ____________________________________________________________
consensus             TGCCTCTTGGACCTTCCCTGCTTCACACATGGCATCAATCACCCTACAACAAAGGGTTTC
 
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rJMSF043N18-          ACTTGGTACATACCTGTTCTCGAGCATATCGTTGAGTAAGCTCACGGCTTCACCTGACTT
                      ____________________________________________________________
consensus             ACTTGGTACATACCTGTTCTCGAGCATATCGTTGAGTAAGCTCACGGCTTCACCTGACTT
 
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rJMSF043N18-          CTTCCCCTCACACAAAGCCTCGATCATCACTGCATAAGTTACATCGTTTGGTTTCACCCC
                      ____________________________________________________________
consensus             CTTCCCCTCACACAAAGCCTCGATCATCACTGCATAAGTTACATCGTTTGGTTTCACCCC
 
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rJMSF043N18-          CATTCTCCTCCATCTCATCCATCACCTTAACCGCATTCATCAATTGCCCTGTCTTAACAA
                      ____________________________________________________________
consensus             CATTCTCCTCCATCTCATCCATCACCTTAACCGCATTCATCAATTGCCCTGTCTTAACAA