Contig 014088:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022J12Sequence678002414 (7)643014088 (3)dbj|BAF64710.1|5e-08putative transposase [Ipomoea tricolor]
JMSF023D11Sequence681002414 (7)735014088 (3)dbj|BAF64710.1|3e-23putative transposase [Ipomoea tricolor]
JMSF043K11Sequence785002414 (7)681014088 (3)dbj|BAF64710.1|1e-19putative transposase [Ipomoea tricolor]

Alignment

This contig is upended


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rJMSF022J12+                          AANCNAATTCGTGNTAGGAAAAGTNAAAACAAAAAATAGAGTGT
                      ____________________________________________________________
consensus                             AANCNAATTCGTGNTAGGAAAAGTNAAAACAAAAAATAGAGTGT
 
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rJMSF023D11+                                                           TTACCTTGTTA
rJMSF022J12+          GGATGTATTATCTTTTNTNTANGAAAGATATGTCNTTAGGNTAGTGNGGTNACCTNGTTA
rJMSF043K11+                                                           TTACCTTGTTA
                      ____________________________________________________________
consensus             GGATGTATTATCTTTTNTNTANGAAAGATATGTCNTTAGGNTAGTGNGGTTACCTTGTTA
 
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rJMSF023D11+          TATTTTTTGTAGAGGAGGTTAGCAGGATTCCTACCAAGTCTGAACACTCCCTATCCCATA
rJMSF022J12+          TATTTNTTGTAGAGGAGGTTAGCAGGATTCCTACCNNGTNTGANCNCTCCCTATCCCATA
rJMSF043K11+          TATTTTTTGTAGAGGAGGTTAGCAGGATTCCTACCAAGTCTGAACACTCCCTATCCCATA
                      ____________________________________________________________
consensus             TATTTTTTGTAGAGGAGGTTAGCAGGATTCCTACCAAGTCTGAACACTCCCTATCCCATA
 
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rJMSF023D11+          AAAGGAAGGGAGCATCTGATAATCCTTTATCCATAACCCTCACAATTACCCTATATCTTG
rJMSF022J12+          AAAGGAAGGGAGCNTCTGNTANTCCNTTATCCNTAACCCTCACAATTACCNTATATCTNG
rJMSF043K11+          AAAGGAAGGGAGCATCTGATAATCCTTTATCCATAACCCTCACAATTACCCTATATCTTG
                      ____________________________________________________________
consensus             AAAGGAAGGGAGCATCTGATAATCCTTTATCCATAACCCTCACAATTACCCTATATCTTG
 
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rJMSF023D11+          CCATTCCTTCCTTGAACTTTTTATCACAATTAGAACAAATTAGATCCTCACCATCTGGTT
rJMSF022J12+          CCATTCNTTCCNTGNACTTTTNATCACAATTAGNACAAATTAGATCCTCACCATCNGGTT
rJMSF043K11+          CCATTCCTTCCTTGAACTTTTTATCACAATTAGAACAAATTAGATCCTCACCATCTGGTT
                      ____________________________________________________________
consensus             CCATTCCTTCCTTGAACTTTTTATCACAATTAGAACAAATTAGATCCTCACCATCTGGTT
 
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rJMSF023D11+          TCAGTTTTCTATTGCAACCTGAGGTTATGCAAGATATGTACATCCAACCAAAAGAACCTT
rJMSF022J12+          TCAGNTNNNTATTGCAACNNGAGGTTATGCNAGATATGTACATCCAACCAAAAGAACCTT
rJMSF043K11+          TCAGTTTTCTATTGCAACCTGAGGTTATGCAAGATATGTACATCCAACCAAAAGAACCTT
                      ____________________________________________________________
consensus             TCAGTTTTCTATTGCAACCTGAGGTTATGCAAGATATGTACATCCAACCAAAAGAACCTT
 
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rJMSF023D11+          CAATTCCTACAATTTGTGCAGGAACATAAAAATCTCCATCCTGCATTGAACCAAGAAATT
rJMSF022J12+          CAATTCCTNCAATTNGTGCAGGAACNTAAAAATCTCCATCCTGCNTNGNACCANGNAATT
rJMSF043K11+          CAATTCCTACAATTTGTGCAGGAACATAAAAATCTCCATCCTGCATTGAACCAAGAAATT
                      ____________________________________________________________
consensus             CAATTCCTACAATTTGTGCAGGAACATAAAAATCTCCATCCTGCATTGAACCAAGAAATT
 
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rJMSF023D11+          GTTTAGTAGCATTGGCCATTAATTAGTATCACTGGTAAGAAATATAAAAATATAAGAATA
rJMSF022J12+          GTTTNGTAGCNTTGGCCNTTAATTAGTATCACTGGTAAGAAATATCAAAATATANGAATA
rJMSF043K11+          GTTTAGTAGCATTGGCCATTAATTAGTATCACTGGTAAGAAATATAAAAATATAAGAATA
                      ____________________________________________________________
consensus             GTTTAGTAGCATTGGCCATTAATTAGTATCACTGGTAAGAAATATAAAAATATAAGAATA
 
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rJMSF023D11+          GTAGAACAACTTTAACCTGTTTGTTTTTCAATAAATCACCAACTGAGGTGACAGTCAGAG
rJMSF022J12+          GNAGAACAACNTTAACCTGTTTGTTTTTCAATAAATCACCAACTGAGGTGACAGTCAGAG
rJMSF043K11+          GTAGAACAACTTTAACCTGTTTGTTTTTCAATAAATCACCAACTGAGGTGACAGTCAGAG
                      ____________________________________________________________
consensus             GTAGAACAACTTTAACCTGTTTGTTTTTCAATAAATCACCAACTGAGGTGACAGTCAGAG
 
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rJMSF023D11+          CACCACTCCTGAATTCTGAAATCCTAGTGGA-CTGGGACATAACTGCACTTGTGGTAATA
rJMSF022J12+          CACCACTCCCGAATTCNGAAATCCTAGTGGATCTGGGACATAACTGCACTTGTGGTAATA
rJMSF043K11+          CACCACTCCTGAATTCTGAAATCCTAGTGGA-CTGGGACATAACTGCACTTGTGGTAATA
                      ____________________________________________________________
consensus             CACCACTCCTGAATTCTGAAATCCTAGTGGA-CTGGGACATAACTGCACTTGTGGTAATA
 
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rJMSF023D11+          CTTCTTAAAAGGACTATGAAC                                       
rJMSF022J12+          CTTCTTNAAAGGACTATGAACAGTTGTTATCCTCCNGAAACCCAAAAAATAAATAAATA 
rJMSF043K11+          CTTCTTAAAAGGACTATGAACAGTTGTTATCCTACAGAAACCCAAAAAATAAATAAATAC
                      ____________________________________________________________
consensus             CTTCTTAAAAGGACTATGAACAGTTGTTATCCTCCAGAAACCCAAAAAATAAATAAATAC