| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008I18 | Sequence | 362 | 014086 (15) | ref|XP_006358174.1| | 6e-16 | PREDICTED: translocase of chloroplast 34, chloroplastic-like [Solanum tuberosum | 740 | 014086 (15) | ref|XP_009599441.1| | 4e-93 | PREDICTED: translocase of chloroplast 34 [Nicotiana tomentosiformis] |
| JMSF017G03 | Sequence | 246 | 014086 (15) | gb|AFL55360.1| | 5e-04 | chloroplast preprotein import receptor Toc34 [Bienertia sinuspersici] | 802 | 014086 (15) | ref|XP_009599441.1| | 2e-101 | PREDICTED: translocase of chloroplast 34 [Nicotiana tomentosiformis] |
| JMSF026K01 | Sequence | 668 | 014086 (15) | ref|XP_006358174.1| | 4e-80 | PREDICTED: translocase of chloroplast 34, chloroplastic-like [Solanum tuberosum | 752 | 014086 (15) | ref|XP_009599441.1| | 1e-92 | PREDICTED: translocase of chloroplast 34 [Nicotiana tomentosiformis] |
| JMSF032D16 | Sequence | 687 | 014086 (15) | ref|XP_006358174.1| | 4e-81 | PREDICTED: translocase of chloroplast 34, chloroplastic-like [Solanum tuberosum | 724 | 014086 (15) | ref|XP_009599441.1| | 3e-91 | PREDICTED: translocase of chloroplast 34 [Nicotiana tomentosiformis] |
| JMSF033D16 | Sequence | 441 | 014086 (15) | ref|XP_006358174.1| | 1e-21 | PREDICTED: translocase of chloroplast 34, chloroplastic-like [Solanum tuberosum | 551 | 014086 (15) | ref|XP_009599441.1| | 2e-49 | PREDICTED: translocase of chloroplast 34 [Nicotiana tomentosiformis] |
| JMSF043H05 | Sequence | 767 | 014086 (15) | ref|XP_006358174.1| | 6e-98 | PREDICTED: translocase of chloroplast 34, chloroplastic-like [Solanum tuberosum | 819 | 014086 (15) | ref|XP_009599441.1| | 2e-106 | PREDICTED: translocase of chloroplast 34 [Nicotiana tomentosiformis] |
| JMSF045K06 | Sequence | 606 | 015846 | 796 | 014086 (15) | ref|XP_009599441.1| | 4e-88 | PREDICTED: translocase of chloroplast 34 [Nicotiana tomentosiformis] | |||
| JMSF047K20 | Sequence | 681 | 014086 (15) | ref|XP_006358174.1| | 5e-80 | PREDICTED: translocase of chloroplast 34, chloroplastic-like [Solanum tuberosum | 723 | 014086 (15) | ref|XP_009599441.1| | 2e-68 | PREDICTED: translocase of chloroplast 34 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF033D16- ATGGCATTACAAAGTGGTACGAAGG
JMSF047K20- ATTACAAAGTGGTACGAAGG
JMSF026K01- TACGAAGG
JMSF017G03- GAAGG
JMSF032D16- ATTACAAAGTGGTACGAAGG
JMSF043H05- TACGAAGG
____________________________________________________________
consensus ATGGCATTACAAAGTGGTACGAAGG
. : . : . : . : . : . :
JMSF033D16- CGATAAGGCCGTCACTGAAGTTTCAAGAGAGAGAGAGGAGCCCTTCCTTAAACCCTTCTC
JMSF047K20- CGATAAGGCCGTCACTGAAGTTTCAAGAGAGAGAGAGGAGCCCTTCCTTAAACCCTTCTC
JMSF026K01- CGATAAGGCCGTCACTGAAGTTTCAAGAGAGAGAGAGGAGCCCTTCCTTAAACCCTTCTC
JMSF008I18- ACTGAAGTTTCAAGAGAGAGAGAGGAGCCCTTCCTTAAACCCTTCTC
JMSF017G03- CGATAAGGCCGTCACTGAAGTTTCAAGAGAGAGAGAGGAGCCCTTCCTTAAACCCTTCTC
JMSF032D16- CGATAAGGCCGTCACTGAAGTTTCAAGAGAGAGAGAGGAGCCCTTCCTTAAACCCTTCTC
JMSF043H05- CGATAAGGCCGTCACTGAAGTTTCAAGAGAGAGAGAGGAGCCCTTCCTTAAACCCTTCTC
____________________________________________________________
consensus CGATAAGGCCGTCACTGAAGTTTCAAGAGAGAGAGAGGAGCCCTTCCTTAAACCCTTCTC
. : . : . : . : . : . :
JMSF033D16- TCTCAAGTCTCTGCTCTCTATTTTTTATCGCTCTCCGCCATTAAAATCCCTTTCTTTCAN
JMSF047K20- TCTCAAGTCTCTGCTCTCTATTTTTTATCGCTCTCCGCCATTAAAATCCCTTTCTTTCAG
JMSF026K01- TCTCAAGTCTCTGCTCTCTATTTTTTATCGCTCTCCGCCATTAAAATCCCTTTCTTTCAG
JMSF008I18- TCTCAAGTCTCTGCTCTCTATTTTTTATCGCTCTCCGCCATTAAAATCCCTTTCTTTCAG
JMSF017G03- TCTCAAGTCTCTGCTCTCTATTTTTTATCGCTCTCCGCCATTAAAATCCCTTTCTTTCAG
JMSF032D16- TCTCAAGTCTCTGCTCTCTATTTTTTATCGCTCTCCGCCATTAAAATCCCTTTCTTTCAG
JMSF043H05- TCTCAAGTCTCTGCTCTCTATTTTTTATCGCTCTCCGCCATTAAAATCCCTTTCTTTCAG
____________________________________________________________
consensus TCTCAAGTCTCTGCTCTCTATTTTTTATCGCTCTCCGCCATTAAAATCCCTTTCTTTCAG
. : . : . : . : . : . :
JMSF033D16- ATTGCAACGAGAAGCCATCTATCTCCGGTGACCTGCAATCCTCTCCATGGCTGCACAAGT
JMSF047K20- ATTGCAACGAGAAGCCATCTATCTCCGGTGACCTGCAATCCTCTCCATGGCTGCACAAGT
JMSF026K01- ATTGCAACGAGAAGCCATCTATCTCCGGTGACCTGCAATCCTCTCCATGGCTGCACAAGT
JMSF008I18- ATTGCAACGAGAAGCCATCTATCTCCGGTGACCTGCAATCCTCTCCATGGCTGCACAAGT
JMSF017G03- ATTGCAACGAGAAGCCATCTATCTCCGGTGACCTGCAATCCTCTCCATGGCTGCACAAGT
JMSF032D16- ATTGCAACGAGAAGCCATCTATCTCCGGTGACCTGCAATCCTCTCCATGGCTGCACAAGT
JMSF043H05- ATTGCAACGAGAAGCCATCTATCTCCGGTGACCTGCAATCCTCTCCATGGCTGCACAAGT
____________________________________________________________
consensus ATTGCAACGAGAAGCCATCTATCTCCGGTGACCTGCAATCCTCTCCATGGCTGCACAAGT
. : . : . : . : . : . :
JMSF033D16- AGTGAGAGAATGGGCTGGTATTCAGCAGTTTCCGGCTGCCACTCAGACCAAGTTACTTGA
JMSF047K20- AGTGAGAGAATGGGCTGGTATTCAGCAGTTTCCGGCTGCCACTCAGACCAAGTTACTTGA
JMSF026K01- AGTGAGAGAATGGGCTGGTATTCAGCAGTTTCCGGCTGCCACTCAGACCAAGTTACTTGA
JMSF008I18- AGTGAGAGAATGGGCTGGTATTCAGCAGTTTCCGGCTGCCACTCAGACCAAGTTACTTGA
JMSF017G03- AGTGAGAGAATGGGCTGGTATTCAGCAGTTTCCGGCTGCCACTCAGACCAAGTTACTTGA
JMSF032D16- AGTGAGAGAATGGGCTGGTATTCAGCAGTTTCCGGCTGCCACTCAGACCAAGTTACTTGA
JMSF043H05- AGTGAGAGAATGGGCTGGTATTCAGCAGTTTCCGGCTGCCACTCAGACCAAGTTACTTGA
____________________________________________________________
consensus AGTGAGAGAATGGGCTGGTATTCAGCAGTTTCCGGCTGCCACTCAGACCAAGTTACTTGA
. : . : . : . : . : . :
JMSF033D16- ATTGTTGGGGAAATTGAANCANGANAACGTGAGCACTTTGACTATCCTGGTGGTGGGGAA
JMSF047K20- ATTGTTGGGGAAATTGAAGCAGGAGAACGTGAGCACTTTGACTATCCTGGTGGTGGGGAA
JMSF026K01- ATTGTTGGGGAAATTGAAGCAGGAGAACGTGAGCACTTTGACTATCCTGGTGGTGGGGAA
JMSF008I18- ATTGTTGGGGAAATTGAAGCAGGAGAACGTGAGCACTTTGACTATCCTGGTGGTGGGGAA
JMSF017G03- A
JMSF032D16- ATTGTTGGGGAAATTGAAGCAGGAGAACGTGAGCACTTTGACTATCCTGGTGGTGGGGAA
JMSF043H05- ATTGTTGGGGAAATTGAAGCAGGAGAACGTGAGCACTTTGACTATCCTGGTGGTGGGGAA
____________________________________________________________
consensus ATTGTTGGGGAAATTGAAGCAGGAGAACGTGAGCACTTTGACTATCCTGGTGGTGGGGAA
. : . : . : . : . : . :
JMSF033D16- AGGTGGTGTTGGAAAATCGTCTACTCTGAATTCAATCCTGTCTGAAAGAGTCGTTGCTAC
JMSF047K20- AGGTGGTGTTGGAAAATCGTCTACTCTGAATTCAATCCTGTCTGAAAGAGTCGTTGCTAC
JMSF026K01- AGGTGGTGTTGGAAAATCGTCTACTCTGAATTCAATCCTGTCTGAAAGAGTCGTTGCTAC
JMSF008I18- AGGTGGTGTTGGAAAATCGTCTACTCTGAATTCAATCCTGTCTGAAAGAGTCGTTGCTAC
JMSF032D16- AGGTGGTGTTGGAAAATCGTCTACTCTGAATTCAATCCTGTCTGAAAGAGTCGTTGCTAC
JMSF043H05- AGGTGGTGTTGGAAAATCGTCTACTCTGAATTCAATCCTGTCTGAAAGAGTCGTTGCTAC
____________________________________________________________
consensus AGGTGGTGTTGGAAAATCGTCTACTCTGAATTCAATCCTGTCTGAAAGAGTCGTTGCTAC
. : . : . : . : . : . :
JMSF033D16- CAGTGCTTTCCAGGCAGAACCTCCAAGACCTATAATGGTCTCACGAGCACGGGCAG
JMSF047K20- CAGTGCTTTCCAGGCAGAACCTCCAAGACCTATAATGGTCTCACGAGCACGGGCAGGATT
JMSF026K01- CAGTGCTTTCCAGGCAGAACCTCCAAGACCTATAATGGTCTCACGAGCACGGGCAGGATT
JMSF008I18- CAGTGCTTTCCAGG
JMSF032D16- CAGTGCTTTCCAGGCAGAACCTCCAAGACCTATAATGGTCTCACGAGCACGGGCAGGATT
JMSF043H05- CAGTGCTTTCCAGGCAGAACCTCCAAGACCTATAATGGTCTCACGAGCACGGGCAGGATT
____________________________________________________________
consensus CAGTGCTTTCCAGGCAGAACCTCCAAGACCTATAATGGTCTCACGAGCACGGGCAGGATT
. : . : . : . : . : . :
JMSF047K20- CACTTTAAACATTATTGACACTCCGGGGCTTGTTGAAGCAGGATATGTGAATGACCAGGT
JMSF026K01- CACTTTAAACATTATTGACACTCCGGGGCTTGTTGAAGCAGGATATGTGAATGACCAGGT
JMSF032D16- CACTTTAAACATTATTGACACTCCGGGGCTTGTTGAAGCAGGATATGTGAATGACCAGGT
JMSF043H05- CACTTTAAACATTATTGACACTCCGGGGCTTGTTGAAGCAGGATATGTGAATGACCAGGT
rJMSF017G03+ GGATATGTGNATGACCAGGT
rJMSF045K06+ GAAGCAGGATATGTGAATGACCAGGT
rJMSF043H05+ CTCCGGGGCTTGTTGNAGCAGGATATGTGAATGACCAGGT
____________________________________________________________
consensus CACTTTAAACATTATTGACACTCCGGGGCTTGTTGAAGCAGGATATGTGAATGACCAGGT
. : . : . : . : . : . :
JMSF047K20- TATTGATCTCATAAAAAGGTTCCTTTTGAACAAGACAATAGATG-TTTTGCTCTATGTGG
JMSF026K01- TATTGATCTCATAAAAAGGTTCCTTTTGAACAAGACAATAGATG-TTTTGCTCTATGTGG
JMSF032D16- TATTGATCTCATAAAAAGGTTCCTTTTGAACAAGACAATAGATG-TTTTGCTCTATGTGG
JMSF043H05- TATTGATCTCATAAAAAGGTTCCTTTTGAACAAGACAATAGATG-TTTTGCTCTATGTGG
rJMSF032D16+ AGACAATAGATG-TTTTGCTCTATGTGG
rJMSF008I18+ TTTGAACCAGACAATAGATG-TTTTGCTCTATGTGG
rJMSF017G03+ TATTGATCTCATAAAAAGGTTCCTTTTGACCAAGACAATAGATG-TTTTGCTCTATGTGG
rJMSF045K06+ TATTGATCTCATAAAAAGGTTCCTTTTGAACAAGACAATAGATGTTTTTGCTCTATGTGG
rJMSF026K01+ TTTGACCAAGACAATAGATG-TTTTGCTCTATGTGG
rJMSF047K20+ AGACAATAGATG-TTTTGCTCTATGTGG
rJMSF043H05+ TATTGATCTCATAAAAAGGTTCCTTTTGAACAAGACAATAGATG-TTTTGCTCTATGTGG
____________________________________________________________
consensus TATTGATCTCATAAAAAGGTTCCTTTTGAACAAGACAATAGATG-TTTTGCTCTATGTGG
. : . : . : . : . : . :
JMSF047K20- ATCGCCTGGATGCGTATAGAGTGGATAACTTGGATTTACAGATTGTCAAAGCCATAACTG
JMSF026K01- ATCGCCTGGATGCGTATAGAGTGGATAACTTGGATTTACAGATTGTCAAAGCCATAACTG
JMSF032D16- ATCGCCTGGATGCGTATAGAGTGGATAACTTGGATTTACAGATTGTCAAAGCCATAACTG
JMSF043H05- ATCGCCTGGATGCGTATAGAGTGGATAACTTGGATTTACAGATTGTCAAAGCCATAACTG
rJMSF032D16+ ATCGCCTGGATGCGTATAGAGTGGATAACTTGGATTTACAGATTGTCAAAGCCATAACTG
rJMSF008I18+ ATCGCCTGGATGCGTATAGAGTGGATAACTTGGATTTACAGATTGTCAAAGCCATAACTG
rJMSF017G03+ ATCGCCTGGATGCGTATAGAGTGGATAACTTGGATTTACAGATTGTCAAAGCCATAACTG
rJMSF045K06+ ATCGCCTGGATGCGTATAGAGTGGATAACTTGGATTTACAGATTGTCAAAGCCATAACTG
rJMSF026K01+ ATCGCCTGGATGCGTATAGAGTGGATAACTTGGATTTACAGATTGTCAAAGCCATAACTG
rJMSF047K20+ ATCGCCTGGATGCGTATAGAGTGGATAACTTGGATTTACAGATTGTCAAAGCCATAACTG
rJMSF043H05+ ATCGCCTGGATGCGTATAGAGTGGATAACTTGGATTTACAGATTGTCAAAGCCATAACTG
____________________________________________________________
consensus ATCGCCTGGATGCGTATAGAGTGGATAACTTGGATTTACAGATTGTCAAAGCCATAACTG
. : . : . : . : . : . :
JMSF047K20- ATAGTTTTGGCAAGCAAATCTGGCGTAGAGGCATTGTTGCACTTACTCATGGTCAGAT
JMSF026K01- ATAGTTTTGGCAAGCAAATCTGGCGTAAAGGCATTGTTGCACTTACTCATGGTCAGATG
JMSF032D16- ATAGTTTTGGCAAGCAAATCTGGCGTAGAGGCATTGTTGCACTTACTCATGGTCAGATGT
JMSF043H05- ATAGTTTTGGCAAGCAAATCTGGCGTAGAGGCATTGTTGCACTTACTCATGGTCAGATGT
rJMSF032D16+ ATAGTTTTGGCAAGCAAATCTGGCGTAGAGGCATTGTTGCACTTACTCATGGTCAGATGT
rJMSF008I18+ ATAGTTTTGGCAAGCAAATCTGGCGTAGAGGCATTGTTGCACTTACTCATGGTCAGATGT
rJMSF017G03+ ATAGTTTTGGCAAGCAAATCTGGCGTAGAGGCATTGTTGCACTTACTCATGGTCAGATGT
rJMSF045K06+ ATAGTTTTGGCAAGCAAATCTGGCGTAGAGGCATTGTTGCACTTACTCATGGTCAGATGT
rJMSF026K01+ ATAGTTTTGGCAAGCAAATCTGGCGTAGAGGCATTGTTGCACTTACTCATGGTCAGATGT
rJMSF047K20+ ATAGTTTTGGCAAGCAAATCTGGCGTAGAGGCATTGTTGCACTTACTCATGGTCAGATGT
rJMSF043H05+ ATAGTTTTGGCAAGCAAATCTGGCGTAGAGGCATTGTTGCACTTACTCATGGTCAGATGT
____________________________________________________________
consensus ATAGTTTTGGCAAGCAAATCTGGCGTAGAGGCATTGTTGCACTTACTCATGGTCAGATGT
. : . : . : . : . : . :
JMSF032D16- CACC
JMSF043H05- CACCACCTGATGGATTGAGTTATGATGAGTTTGCCTCCAAAAGGTCGGCGGCAATTTTGA
rJMSF032D16+ CACCACCTGATGGATTGAGTTATGATGAGTTTGCCTCCAAAAGGTCGGCGGCAATTTTGA
rJMSF033D16+ GATGAGTTTGCCTCCAAAAGGTCGGCGGCAATTTTGA
rJMSF008I18+ CACCACCTGATGGATTGAGTTATGATGAGTTTGCCTCCAAAAGGTCGGCGGCAATTTTGA
rJMSF017G03+ CACCACCTGATGGATTGAGTTATGATGAGTTTGCCTCCAAAAGGTCGGCGGCAATTTTGA
rJMSF045K06+ CACCACCTGATGGATTGAGTTATGATGAGTTTGCCTCCAAAAGGTCGGCGGCAATTTTGA
rJMSF026K01+ CACCACCTGATGGATTGAGTTATGATGAGTTTGCCTCCAAAAGGTCGGCGGCAATTTTGA
rJMSF047K20+ CACCACCTGATGGATTGAGTTATGATGAGTTTG-CTCCAAAAGGTCGGCGGCAATTTTGA
rJMSF043H05+ CACCACCTGATGGATTGAGTTATGATGAGTTTGCCTCCAAAAGGTCGGCGGCAATTTTGA
____________________________________________________________
consensus CACCACCTGATGGATTGAGTTATGATGAGTTTGCCTCCAAAAGGTCGGCGGCAATTTTGA
. : . : . : . : . : . :
JMSF043H05- AGGTTGTTCGCCAGGGAATAGGAATGAGGAAATCAGAA
rJMSF032D16+ AGGTTGTTCGCCAGGGAATAGGAATGAGGAAATCAGAATTTCAGAAAACTCCAATTCCCC
rJMSF033D16+ AGGNTGTTCGCCAGGGAATAGGAATGAGGAAATCAGAATTTCAGAAAACTCCAATTCCCC
rJMSF008I18+ AGGTTGTTCGCCAGGGAATAGGAATGAGGAAATCAGAATTTCAGAAAACTCCAATTCCCC
rJMSF017G03+ AGGTTGTTCGCCAGGGAATAGGAATGAGGAAATCAGAATTTCAGAAAACTCCAATTCCCC
rJMSF045K06+ AGGTTGTTCGCCAGGGAATAGGAATGAGGAAATCAGAATTTCAGAAAACTCCAATTCCCC
rJMSF026K01+ AGGTTGTTCGCCAGGGAATAGGAATGAGGAAATCAGAATTTCAGAAAACTCCAATTCCCC
rJMSF047K20+ AGGTTGTTCGCCAGGGAATAGGAATGAGGAAATCAGAATTTCAGAAAACTCCAATTCCCC
rJMSF043H05+ AGGTTGTTCGCCAGGGAATAGGAATGAGGAAATCAGAATTTCAGAAAACTCCAATTCCCC
____________________________________________________________
consensus AGGTTGTTCGCCAGGGAATAGGAATGAGGAAATCAGAATTTCAGAAAACTCCAATTCCCC
. : . : . : . : . : . :
rJMSF032D16+ TCGTCTTGGTTGAAAACAGTGGACGGTGCAACAAGAATGAAAGTGATGAGAAGATCCTTC
rJMSF033D16+ TCGTCTTGGTTGAAAACAGTGGACGGTGCAACAAGAATGAAAGTGATGAGAAGATCCTTC
rJMSF008I18+ TCGTCTTGGTTGAAAACAGTGGACGGTGCAACAAGAATGAAAGTGATGAGAAGATCCTTC
rJMSF017G03+ TCGTCTTGGTTGAAAACAGTGGACGGTGCAACAAGAATGAAAGTGATGAGAAGATCCTTC
rJMSF045K06+ TCGTCTTGGTTGAAAACAGTGGACGGTGCAACAAGAATGAAAGTGATGAGAAGATCCTTC
rJMSF026K01+ TCGTCTTGGTTGAAAACAGTGGACGGTGCAACAAGAATGAAAGCGATGAGAAGATCCTTC
rJMSF047K20+ TCGTCTTGGTTGAAAACAGTGGACGGTGCAACAAGAATGAAAGTGATGAGAAGATCCTTC
rJMSF043H05+ TCGTCTTGGTTGAAAACAGTGGACGGTGCAACAAGAATGAAAGCGATGAGAAGATCCTTC
____________________________________________________________
consensus TCGTCTTGGTTGAAAACAGTGGACGGTGCAACAAGAATGAAAGTGATGAGAAGATCCTTC
. : . : . : . : . : . :
rJMSF032D16+ CCAATGGAGAAGCTTGGATACCTGGTCTTGTTCATAAAATCACGGAAGTTGTCTTAAATG
rJMSF033D16+ CCAATGGAGAAGCTTGGATACCTGGTCTTGTTCATAAAATCACGGAAGTTGTCTTAAATG
rJMSF008I18+ CCAATGGAGAAGCTTGGATACCTGGTCTTGTTCATAAAATCACGGAAGTTGTCTTAAATG
rJMSF017G03+ CCAATGGAGAAGCTTGGATACCTGGTCTTGTTCATAAAATCACGGAAGTTGTCTTAAATG
rJMSF045K06+ CCAATGGAGAAGCTTGGATACCTGGTCTTGTTCATAAAATCACGGAAGTTGTCTTAAATG
rJMSF026K01+ CCAATGGAGAAGCTTGGATACCTGGTCTTGTTCATAAAATCACGGAAGTTGTCTTAAATG
rJMSF047K20+ CCAATGGAGAAGCTTGGATACCTGGTCTTGTTCATAAAATCACGGAAGTTGTCTTAAATG
rJMSF043H05+ CCAATGGAGAAGCTTGGATACCTGGTCTTGTTCATAAAATCACGGAAGTTGTCTTAAATG
____________________________________________________________
consensus CCAATGGAGAAGCTTGGATACCTGGTCTTGTTCATAAAATCACGGAAGTTGTCTTAAATG
. : . : . : . : . : . :
rJMSF032D16+ GAAGCGAGAGTATTTTGGTCGACAAGAAGTTGGTTGATGGACCAAATCCTAATGAAAGGG
rJMSF033D16+ GAAGCGAGAGTATTTTGGTCGACAAGAAGTTGGTTGATGGACCNAATCNTAANGAAAGGG
rJMSF008I18+ GAAGCGAGAGTATTTTGGTCGACAAGAAGTTGGTTGATGGACCAAATCCTAATGAAAGGG
rJMSF017G03+ GAAGCGAGAGTATTTTGGTCGACAAGAAGTTGGTTGATGGACCAAATCCTAATGAAAGGG
rJMSF045K06+ GAAGCGAGAGTATTTTGGTCGACAAGAAGTTGGTTGATGGACCAAATCCTAATGAAAGGG
rJMSF026K01+ GAAGCGAGAGTATTTTGGTCGACAAGAAGTTGGTTGATGGACCAAATCCTAATGAAAGGG
rJMSF047K20+ GAAGCGAGAGTATTTTGGTCGACAAGAAGTTGGTTGATGGACCAAATCCTAATGAAAGGG
rJMSF043H05+ GAAGCGAGAGTATTTTGGTCGACAAGAAGTTGGTTGATGGACCAAATCCTAATGAAAGGG
____________________________________________________________
consensus GAAGCGAGAGTATTTTGGTCGACAAGAAGTTGGTTGATGGACCAAATCCTAATGAAAGGG
. : . : . : . : . : . :
rJMSF032D16+ GGAAGTTATTTATCCCTCTCATTTTAGCTTTCCAATATTTCTTTGTTGTGAAGAAGATTG
rJMSF033D16+ GGAAGTTATTTATCCCTCTCATTTTAGCTTTCCAATATTTCTTTGTTGTGAAGAAGATTG
rJMSF008I18+ GGAAGTTATTTATCCCTCTCATTTTAGCTTTCCAATATTTCTTTGTTGTGAAGAAGATTG
rJMSF017G03+ GGAAGTTATTTATCCCTCTCATTTTAGCTTTCCAATATTTCTTTGTTGTGAAGAAGATTG
rJMSF045K06+ GGAAGTTATTTATCCCTCTCATTTTAGCTTTCCAATATTTCTTTGTTGTGAAGAAGATTG
rJMSF026K01+ GGAAGTTATTTATCCCTCTCATTTTAGCTTTCCAATATTTCTTTGTTGTGAAGAAGATTG
rJMSF047K20+ GGAAGTTATTTATCCCTCTCATTTTAGCTTTCCAATATTTCTTTGTTGTGAAGAAGATTG
rJMSF043H05+ GGAAGTTATTTATCCCTCTCATTTTAGCTTTCCAATATTTCTTTGTTGTGAAGAAGATTG
____________________________________________________________
consensus GGAAGTTATTTATCCCTCTCATTTTAGCTTTCCAATATTTCTTTGTTGTGAAGAAGATTG
. : . : . : . : . : . :
rJMSF032D16+ AGAACTGGATCAGGGCCGATATAAGGAAAGATCGCAGGTCAAAGCGTTTCTGATGTTCTC
rJMSF033D16+ AGAACTGGATCAGGGCCGATATAAGGAAAGATCGCAGGTCAAAGCGTTTCTGATGTTCTC
rJMSF008I18+ AGAACTGGATCAGGGCCGATATAAGGAAAGATCGCAGGTCAAAGCGTTTCTGATGTTCTC
rJMSF017G03+ AGAACTGGATCAGGGCCGATATAAGGAAAGATCGCAGGTCAAAGCGTTTCTGATGTTCTC
rJMSF045K06+ AGAACTGGATCAGGGCCGATATAAGGAAAGATCGCAGGTCAAAGCGTTTCTGATGTTCTC
rJMSF026K01+ AGAACTGGATCAGGGCCGATATAAGGAAAGATCGCAGGTCAAAGCGTTTCTGATGTTCTC
rJMSF047K20+ AGAACTGGATCAGGGCCGATATAAGGAAAGATCGCAGGTCAAAGCGTTTCTGATGTTCTC
rJMSF043H05+ AGAACTGGATCAGGGCCGATATAAGGAAAGATCGCAGGTCAAAGCGTTTCTGATGTTCTC
____________________________________________________________
consensus AGAACTGGATCAGGGCCGATATAAGGAAAGATCGCAGGTCAAAGCGTTTCTGATGTTCTC
. : . : . : . : . : . :
rJMSF032D16+ TGTCTTCGATGCATCGATTTGTTCTAATACCGTAGAATCTTTTGTAGTAGTTGTCTATCA
rJMSF033D16+ TGTCTTCGCTGCANCGATTTGTTCTAATACCGTAGAATCTTTTGTAGTAGTTGTCTATCA
rJMSF008I18+ TGTCTTCGATGCATCGATTTGTTCTAATACCGTAGAATCTTTTGTAGTAGTTGTCTATCA
rJMSF017G03+ TGTCTTCGATGCATCGATTTGTTCTAATACCGTAGAATCTTTTGTAGTAGTTGTCTATCA
rJMSF045K06+ TGTCTTCGATGCATCGATTTGTTCTAATACCGTAGAATCTTTTGTAGTAGTTGTCTATCA
rJMSF026K01+ TGTCTTCGATGCATCGATTTGTTCTAATACCGTAGAATCTTTTGTAGTAGTTGTCTATCA
rJMSF047K20+ TGTCTTCGATGCATCGATTTGTTCTAATACCGTAGAATCTTTTGTAGTAGTTGTCTATCA
rJMSF043H05+ TGTCTTCGATGCATCGATTTGTTCTAATACCGTAGAATCTTTTGTAGTAGTTGTCTATCA
____________________________________________________________
consensus TGTCTTCGATGCATCGATTTGTTCTAATACCGTAGAATCTTTTGTAGTAGTTGTCTATCA
. : . : . : . : . : . :
rJMSF032D16+ CTCTATCCATCAGAGGCAACTGGAAAGTTATATGCGGCTGTTGAATTTCAATTTTCTTCA
rJMSF033D16+ CTCTATCCATCAGAGGCAACTGGAAAGTTATATGCGGCTGTTGAATNTCAATTTTCTTCA
rJMSF008I18+ CTCTATCCATCAGAGGCAACTGGAAAGTTATATGCGGCTGTTGAATTTCAATTTTCTTCA
rJMSF017G03+ CTCTATCCATCAGAGGCAACTGGAAAGTTATATGCGGCTGTTGAATTTCAATTTTCTTCA
rJMSF045K06+ CTCTATCCATCAGAGGCAACTGGAAAGTTATATGCGGCTGTTGAATTTCAATTTTCTTCA
rJMSF026K01+ CTCTATCCATCAGAGGCAACTGGAAAGTTATATGCGGCTGTTGAATTTCAATTTTCTTCA
rJMSF047K20+ CTCTATCCATCAGAGGCAACTGGAAAGTTATATGCGGCTGTTGAATTTCAATTTTCTTCA
rJMSF043H05+ CTCTATCCATCAGAGGCAACTGGAAAGTTATATGCGGCTGTTGAATTTCAATTTTCTTCA
____________________________________________________________
consensus CTCTATCCATCAGAGGCAACTGGAAAGTTATATGCGGCTGTTGAATTTCAATTTTCTTCA
. : . : . : . : . : . :
rJMSF032D16+ AAGAGCTTAGATTCTGTACTAATTG-TAACTCAGA
rJMSF033D16+ AAGAGCTNAGATTC
rJMSF008I18+ AAGAGCTTAGATTCTGTACTAATTGT
rJMSF017G03+ AAGAGCTTAGATTCTGTACTAATTG-TAACTCAGATTTCTCACTCTCTT
rJMSF045K06+ AAGAGCTTAGATTCTGTACTAATTG-TAACTCAGA
rJMSF026K01+ AAGAGCTTAGATTCTGTACTAATTGTTAACTCAGATTTCTCACTCTCTT
rJMSF047K20+ AAGAGCTTAGATTCTGTACTAATTG-TAACTCAGA
rJMSF043H05+ AAGAGCTTAGATTCTGTACTAATTGTTAACTCAGATTTCTCACTCTCTTTCTGGGATGCT
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consensus AAGAGCTTAGATTCTGTACTAATTG-TAACTCAGATTTCTCACTCTCTTTCTGGGATGCT