Contig 014085:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029N10Sequence595014085 (6)emb|CDX97861.1|2e-72BnaC04g40780D [Brassica napus]735014085 (6)emb|CDX97861.1|8e-72BnaC04g40780D [Brassica napus]
JMFF038K05Sequence496014085 (6)emb|CDX97861.1|5e-71BnaC04g40780D [Brassica napus]753014085 (6)emb|CDX97861.1|1e-70BnaC04g40780D [Brassica napus]
JMSF043D15Sequence751014085 (6)emb|CDX97861.1|9e-72BnaC04g40780D [Brassica napus]689014085 (6)emb|CDX97861.1|5e-72BnaC04g40780D [Brassica napus]

Alignment

This contig is upended


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JMFF038K05-                      ATTCCCCCGTGAACTGTCGTGAAAGTTCTAGCTTCATCGCAAAACCACT
JMFF029N10-                      ATTCCCCCGTGAACTGTCGTGAAAGTTCTAGCTTCATCGCAAAACCACT
rJMFF038K05+                                    GTCGTGAAAGTTCTAGCTTCATCGCAAAACCACT
rJMFF029N10+                                                CTAGCTTCATCGCAAAACCACT
JMSF043D15-                                     GTCGTGAAAGTTCTAGCTTCATCGCAAAACCACT
                      ____________________________________________________________
consensus                        ATTCCCCCGTGAACTGTCGTGAAAGTTCTAGCTTCATCGCAAAACCACT
 
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JMFF038K05-           CGCCGGTTTCATATACGCGGCTACCTGTCCCCAATCTCGACTTGTTTCTTTGGACCGGAT
JMFF029N10-           CGCCGGTTTCATATACGCGGCTACCTGTCCCCAATCTCGACTTGTTTCTTTGGACCGGAT
rJMFF038K05+          CGCCGGTTTCATATACGCGGCTACCTGTCCCCAATCTCGACTTGTTTCTTTGGACCGGAT
rJMFF029N10+          CGCCGGTTTCATATACGCGGCTACCTGTCCCCAATCTCGACTTGTTTCTTTGGACCGGAT
JMSF043D15-           CGCCGGTTTCATATACGCGGCTACCTGTCCCCAATCTCGACTTGTTTCTTTGGACCGGAT
rJMSF043D15+                                                     GTTTCTTTGGACCGGAT
                      ____________________________________________________________
consensus             CGCCGGTTTCATATACGCGGCTACCTGTCCCCAATCTCGACTTGTTTCTTTGGACCGGAT
 
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JMFF038K05-           CCTCAACAGCTGCTACGATTTTGAGGTTTTACATCAGCTTGGGTATAAAACGGTCTTGCT
JMFF029N10-           CCTCAACAGCTGCTACGATTTTGAGGTTTTACATCAGCTTGGGTATAAAACGGTCTTGCT
rJMFF038K05+          CCTCAACAGCTGCTACGATTTTGAGGTTTTACATCAGCTTGGGTATAAAACGGTCTTGCT
rJMFF029N10+          CCTCAACAGCTGCTACGATTTTGAGGTTTTACATCAGCTTGGGTATAAAACGGTCTTGCT
JMSF043D15-           CCTCAACAGCTGCTACGATTTTGAGGTTTTACATCAGCTTGGGTATAAAACGGTCTTGCT
rJMSF043D15+          CCTCAACAGCTGCTACGATTTTGAGGTTTTACATCAGCTTGGGTATAAAACGGTCTTGCT
                      ____________________________________________________________
consensus             CCTCAACAGCTGCTACGATTTTGAGGTTTTACATCAGCTTGGGTATAAAACGGTCTTGCT
 
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JMFF038K05-           GGAAGTATGGCCAAGCACCATCCTGATCTGATCATGTGCAGGAAGCAGCCAGGAATAGCC
JMFF029N10-           GGAAGTATGGCCAAGCACCATCCTGATCTGATCATGTGCAGGAAGCAGCCAGGAATAGCC
rJMFF038K05+          GGAAGTATGGCCAAGCACCATCCTGATCTGATCATGTGCAGGAAGCAGCCAGGAATAGCC
rJMFF029N10+          GGAAGTATGGCCAAGCACCATCCTGATCTGATCATGTGCAGGAAGCAGCCAGGAATAGCC
JMSF043D15-           GGAAGTATGGCCAAGCACCATCCTGATCTGATCATGTGCAGGAAGCAGCCAGGAATAGCC
rJMSF043D15+          GGAAGTATGGCCAAGCACCATCCTGATCTGATCATGTGCAGGAAGCAGCCAGGAATAGCC
                      ____________________________________________________________
consensus             GGAAGTATGGCCAAGCACCATCCTGATCTGATCATGTGCAGGAAGCAGCCAGGAATAGCC
 
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JMFF038K05-           ATTGGACGGCTTTGTGAGAAATGTGATGGGAAATGTGTCATTTGTGATTCTTACGTTCGG
JMFF029N10-           ATTGGACGGCTTTGTGAGAAATGTGATGGGAAATGTGTCATTTGTGATTCTTACGTTCGG
rJMFF038K05+          ATTGGACGGCTTTGTGAGAAATGTGATGGGAAATGTGTCATTTGTGATTCTTACGTTCGG
rJMFF029N10+          ATTGGACGGCTTTGTGAGAAATGTGATGGGAAATGTGTCATTTGTGATTCTTACGTTCGG
JMSF043D15-           ATTGGACGGCTTTGTGAGAAATGTGATGGGAAATGTGTCATTTGTGATTCTTACGTTCGG
rJMSF043D15+          ATTGGACGGCTTTGTGAGAAATGTGATGGGAAATGTGTCATTTGTGATTCTTACGTTCGG
                      ____________________________________________________________
consensus             ATTGGACGGCTTTGTGAGAAATGTGATGGGAAATGTGTCATTTGTGATTCTTACGTTCGG
 
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JMFF038K05-           CCTTGTACACTTGTTCGTGTGTGCGATGAATGCAACTATGGTTCTTTTCAGGGTCGCTGT
JMFF029N10-           CCTTGTACACTTGTTCGTGTGTGCGATGAATGCAACTATGGTTCTTTTCAGGGTCGCTGT
rJMFF038K05+          CCTTGTACACTTGTTCGTGTGTGCGATGAATGCAACTATGGTTCTTTTCAGGGTCGCTGT
rJMFF029N10+          CCTTGTACACTTGTTCGTGTGTGCGATGAATGCAACTATGGTTCTTTTCAGGGTCGCTGT
JMSF043D15-           CCTTGTACACTTGTTCGTGTGTGCGATGAATGCAACTATGGTTCTTTTCAGGGTCGCTGT
rJMSF043D15+          CCTTGTACACTTGTTCGTGTGTGCGATGAATGCAACTATGGTTCTTTTCAGGGTCGCTGT
                      ____________________________________________________________
consensus             CCTTGTACACTTGTTCGTGTGTGCGATGAATGCAACTATGGTTCTTTTCAGGGTCGCTGT
 
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JMFF038K05-           GTCATCTGTGGAGGGGTTGGGATTTCTGATGCTTACTACTGTAAGGAGTGTACTCAGCAG
JMFF029N10-           GTCATCTGTGGAGGGGTTGGGATTTCTGATGCTTACTACTGTAAGGAGTGTACTCAGCAG
rJMFF038K05+          GTCATCTGTGGAGGGGTTGGGATTTCTGATGCTTACTACTGTAAGGAGTGTACTCAGCAG
rJMFF029N10+          GTCATCTGTGGAGGGGTTGGGATTTCTGATGCTTACTACTGTAAGGAGTGTACTCAGCAG
JMSF043D15-           GTCATCTGTGGAGGGGTTGGGATTTCTGATGCTTACTACTGTAAGGAGTGTACTCAGCAG
rJMSF043D15+          GTCATCTGTGGAGGGGTTGGGATTTCTGATGCTTACTACTGTAAGGAGTGTACTCAGCAG
                      ____________________________________________________________
consensus             GTCATCTGTGGAGGGGTTGGGATTTCTGATGCTTACTACTGTAAGGAGTGTACTCAGCAG
 
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JMFF038K05-           GAGAAAGATCGTGATGGTTGTCCTAAAATTGTCAATCTTGGAAGTGCCAAAACTGATCTC
JMFF029N10-           GAGAAAGATCGTGATGGTTGTCCTAAAATTGTCAATCTTGGAAGTGCCAAAACTGATCTC
rJMFF038K05+          GAGAAAGATCGTGATGGTTGTCCTAAAATTGTCAATCTTGGAAGTGCCAAAACTGATCTC
rJMFF029N10+          GAGAAAGATCGTGATGGTTGTCCTAAAATTGTCAATCTTGGAAGTGCCAAAACTGATCTC
JMSF043D15-           GAGAAAGATCGTGATGGTTGTCCTAAAATTGTCAATCTTGGAAGTGCCAAAACTGATCTC
rJMSF043D15+          GAGAAAGATCGTGATGGTTGTCCTAAAATTGTCAATCTTGGAAGTGCCAAAACTGATCTC
                      ____________________________________________________________
consensus             GAGAAAGATCGTGATGGTTGTCCTAAAATTGTCAATCTTGGAAGTGCCAAAACTGATCTC
 
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JMFF038K05-           TTCTACGAGCGTAAAAAATATGGTTTC                                 
JMFF029N10-           TTCTACGAGCGTAAAAAATATGGTTTCAAGAAAAGATGATTGCTGCTCCAAAGAAATAAT
rJMFF038K05+          TTNTACGAGCGTAAAAAATATGGTTTCAAGAAAAGATGATTGCTGCTCCAAAGAAATAAT
rJMFF029N10+          TTCTACGAGCGTAAAAAATATGGTTTCAAGAAAAGATGATTGCTGCTCCAAAGAAATAAT
JMSF043D15-           TTCTACGAGCGTAAAAAATATGGTTTCAAGAAAAGATGATTGCTGCTCCAAAGAAATAAT
rJMSF043D15+          TTCTACGAGCGTAAAAAATATGGTTTCAAGAAAAGATGATTGCTGCTCCAAAGAAATAAT
                      ____________________________________________________________
consensus             TTCTACGAGCGTAAAAAATATGGTTTCAAGAAAAGATGATTGCTGCTCCAAAGAAATAAT
 
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JMFF029N10-           GCCAAATTGCAATTTCATTCAGTGTTTACCATTCTCTTGTCATGTAGTTTGTACTCTTAA
rJMFF038K05+          GCCAAATTGCAATTTCATTCAGTGTTTACCATTCTCTTGTCATGTAGTTTGTACTCTTAA
rJMFF029N10+          GCCAAATTGCAATTTCATTCAGTGTTTACCATTCTCTTGTCATGTAGTTTGTACTCTTAA
JMSF043D15-           GCCAAATTGCAATTTCATTCAGTGTTTACCATTCTCTTGTCATGTAGTTTGTACTCTTAA
rJMSF043D15+          GCCAAATTGCAATTTCATTCAGTGTTTACCATTCTCTTGTCATGTAGTTTGTACTCTTAA
                      ____________________________________________________________
consensus             GCCAAATTGCAATTTCATTCAGTGTTTACCATTCTCTTGTCATGTAGTTTGTACTCTTAA
 
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JMFF029N10-           TTTTAA                                                      
rJMFF038K05+          TTTTAATGTGGTAGACATCCAAGAAAGAAAGTTAGTGATGTGTTTAGCCAACCTTTGGTT
rJMFF029N10+          TTTTAATGTGGTAGACATCCAAGAAAGAAAGTTAGTGATGTGTTTAGCCAACCTTTGGTT
JMSF043D15-           TTTTAATGTGGTAGACATCCAAGAAAGAAAGTTAGTGATGTGTTTAGCCAACCTTTGGTT
rJMSF043D15+          TTTTAATGTGGTAGACATCCAAGAAAGAAAGTTAGTGATGTGTTTAGCCAACCTTTGGTT
                      ____________________________________________________________
consensus             TTTTAATGTGGTAGACATCCAAGAAAGAAAGTTAGTGATGTGTTTAGCCAACCTTTGGTT
 
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rJMFF038K05+          TACTATGATCTTTTTTTCTGTCAGTACCGAGTGGGTGTCCTATCGTGGTTTTGCAACACG
rJMFF029N10+          TACTATGATCTTTTTTTCTGTCAGTACCGAGTGGGTGTCCTATCGTGGTTTTGCAACACG
JMSF043D15-           TACTATGATCTTTTTTTCTGTCAGTACCGAGTGGGTGTCCTATCGTGGTTTTGCAACACG
rJMSF043D15+          TACTATGATCTTTTTTTCTGTCAGTACCGAGTGGGTGTCCTATCGTGGTTTTGCAACACG
                      ____________________________________________________________
consensus             TACTATGATCTTTTTTTCTGTCAGTACCGAGTGGGTGTCCTATCGTGGTTTTGCAACACG
 
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rJMFF038K05+          AACTAGAAACACTGGCCTGAATTGTCTTGTTGGT                          
rJMFF029N10+          AACTAGAAACACTGGCCTGAATTGTCTTGTTGGT                          
JMSF043D15-           AACTAGAAACACTGGCCTGAATTGTCTTGTTGGT                          
rJMSF043D15+          AACTAGAAACACTGGCCTGAATTGTCTTGTTGGTTGTAATTCTTAAACAATTTGTAGGTA
                      ____________________________________________________________
consensus             AACTAGAAACACTGGCCTGAATTGTCTTGTTGGTTGTAATTCTTAAACAATTTGTAGGTA